Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20214
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0370 + 2909216-2909797 42 3e-04
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 29 3.1
12_01_0226 + 1715211-1716761 28 5.4
11_01_0228 + 1768318-1769871 28 5.4
08_02_0196 - 14125037-14125175,14125525-14125604,14125938-141264... 28 5.4
11_06_0679 - 26227654-26227770,26234067-26236217 28 7.1
06_01_0077 + 626126-626137,626222-627421 28 7.1
04_04_1435 + 33585508-33586490,33586646-33586664 28 7.1
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 28 7.1
02_02_0186 + 7594197-7594281,7594409-7594513,7595062-7595238,759... 27 9.4
>05_01_0370 + 2909216-2909797
Length = 193
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/86 (27%), Positives = 37/86 (43%)
Frame = +3
Query: 255 MGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAA 434
M A++++W E G L + QL+ +W P+ GL + ++ A
Sbjct: 98 MALAAWMVWAE-GGLHRRPGATLAPFVAQLVAALAWAPLALGLAAPAAGLACCAAMAAGA 156
Query: 435 VATTLSFGSVNKTAGLLLVPYLAWLI 512
A FG VN AG L P +AW +
Sbjct: 157 AACARGFGGVNPVAGDLAKPCVAWAV 182
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 172 SWYDELKKPSWTPPK 216
SW +E+KKPSW P K
Sbjct: 600 SWQEEIKKPSWHPYK 614
>12_01_0226 + 1715211-1716761
Length = 516
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 264 HIPSAVENSP---SWTKYPLWGSPAWLL*FIIPGLFTAV 157
H+P+ V NS WT + GSP + F IPG+ T +
Sbjct: 45 HLPAFVNNSHRFLDWTTELIVGSPEMRMGFWIPGMRTGI 83
>11_01_0228 + 1768318-1769871
Length = 517
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 264 HIPSAVENSP---SWTKYPLWGSPAWLL*FIIPGLFTAV 157
H+P+ V NS WT + GSP + F IPG+ T +
Sbjct: 45 HLPAFVNNSHRFLDWTTELIVGSPEMRMGFWIPGMRTGI 83
>08_02_0196 -
14125037-14125175,14125525-14125604,14125938-14126463,
14126809-14126852,14127444-14127584,14127696-14128463
Length = 565
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 225 WSSLDCSLQQMGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSW 362
W+S + S+ + +L+ E D D V+P+ + +LL W W
Sbjct: 74 WTSCNLSITRRVKVPFLLGEFSDNVECD-VVPVPMSSCHILLGWQW 118
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 514 HISQAKYG--TSNKPAVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQL 350
++SQA+ T N P +T+P ++ T P +I + + SF P I +Q Q+
Sbjct: 127 NLSQAQIPILTQNTPQAQITIPTQNLAQTLIPSQNQIPIQTHI-SFQP-HIPIQTQI 181
>06_01_0077 + 626126-626137,626222-627421
Length = 403
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 9 DFIITSLQFLPIIRFKRFRNGKLACTWFNYPSKCWWMGQWIVFC 140
++ + +LQ PI+R + K+ W++ ++C +M W V C
Sbjct: 236 EYSLYTLQLAPILRLE-----KIKTLWWDNMNECPYMRPWFVVC 274
>04_04_1435 + 33585508-33586490,33586646-33586664
Length = 333
Score = 27.9 bits (59), Expect = 7.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 66 NGKLACTWFNYPSKC 110
+G+L C WF YP +C
Sbjct: 244 DGELYCVWFRYPIRC 258
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 52 LKDFVMANWPALGSIILPNVGGWANGLFFAGQIRKDSSEKSWYDELKKPSWT-PPKWV 222
++ FV W + G I NGL A Q K S S + +L+ SW+ PP V
Sbjct: 109 VRSFVNPVWTSSGRPITQGDSLNGNGLNTASQTEKQSDSDSSHKKLQGLSWSFPPSIV 166
>02_02_0186 +
7594197-7594281,7594409-7594513,7595062-7595238,
7595716-7595886,7596198-7596289,7596302-7596407,
7597516-7597601,7597861-7598501,7599065-7599107
Length = 501
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = -3
Query: 496 YGTSNKPAVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRG 317
YG+S P V +P D + S E S P ++ D PYN+R
Sbjct: 420 YGSSETPQVSSKVPKDRLRHRHREKSGEAVYGTSHPEPKPAEVKPADYSDPKYDPYNIRS 479
Query: 316 R 314
+
Sbjct: 480 K 480
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,679,630
Number of Sequences: 37544
Number of extensions: 463090
Number of successful extensions: 1154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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