Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20214
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_46904| Best HMM Match : Pentaxin (HMM E-Value=0.13) 30 1.4
SB_27455| Best HMM Match : Extensin_2 (HMM E-Value=0.75) 30 1.8
SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17) 30 1.8
SB_5308| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 4.2
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_28917| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096) 28 7.3
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4) 27 9.7
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +1
Query: 64 VMANWPALG----SIILPNVGGWANGLFFAGQIRKDSSEKSWYDELKKPSWTPP 213
++ NWP S+++P + W +G+ + + W + K+P W PP
Sbjct: 397 ILINWPFQQEYRTSLLIPRIF-WVKDSHMSGECGLGALSRDWVYDRKRPRWRPP 449
>SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 445 VVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVKPS 290
+ AT P+S E + N S+ +++ K+G T YN+ R +VKPS
Sbjct: 1 MAATVMPESNEENKNPSVNTYSLNKVGSCG--IGLLTEYNIPPRKGPTVKPS 50
>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2532
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 308 CSPTSHIVRSTAATQLVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 466
C P S I+RS ++ L + ++ GLQ + S + G+ G D R C+
Sbjct: 1365 CHPQSWIIRSKISSNLTGEPPKRKLNGLQQVCNNMASVLSGTEGKDNFSRLCR 1417
>SB_46904| Best HMM Match : Pentaxin (HMM E-Value=0.13)
Length = 323
Score = 30.3 bits (65), Expect = 1.4
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = -3
Query: 583 CQDLYVPSPV*DCSSRC-SKKGSWHISQA-KYGTSNKPAVLLTLPNDSVVATAAPDSTEI 410
CQDLY SP CS + G H++++ +G A+ ++ N++VV ++ ST
Sbjct: 237 CQDLYASSPATGCSPPLYALFGRSHLTESLLWGCYYSNALTTSIENNAVVYDSSVLSTCT 296
Query: 409 S-MNASLKSFNPKKIGVQDQLSSSCTPYN 326
S N +L S + VQD S C N
Sbjct: 297 SKRNTALTSIK-TRTSVQD--CSQCVAIN 322
>SB_27455| Best HMM Match : Extensin_2 (HMM E-Value=0.75)
Length = 159
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = +1
Query: 145 QIRKDSSEKSWYDELKKPSW----TPPKW 219
Q ++DSS W +L P W TPP+W
Sbjct: 107 QWKRDSSPPQWKQDLSPPQWKRESTPPQW 135
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = +1
Query: 145 QIRKDSSEKSWYDELKKPSW----TPPKW 219
QI++DSS W E P W +PP+W
Sbjct: 26 QIKRDSSPPQWKRESTPPQWKRDSSPPQW 54
>SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17)
Length = 738
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 313 SYLSHCTEYSCYSTGPGLLFSSD*RTSSWHSLRSQCCPGQQWQRHCHS 456
S L++ +SC PG FS +SS S+C GQ +R C+S
Sbjct: 200 SVLTNPANHSCVKCAPGKSFSESIDSSSCKPC-SKCAVGQMVERACNS 246
>SB_5308| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 608
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +3
Query: 315 LPLTLYGVQLLLNWSWTPI----FFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGL 482
LP T+YGV + + + P+ + K F +F +S +V ++ S S + A
Sbjct: 176 LPQTIYGVFVSICGYFVPLSVMAYAYFKIFHSSFRSARRVSMTSVTSSNSVLSHKRVAVT 235
Query: 483 LLVPYLAWLICQLPFLLH 536
+++ + +L+C PF ++
Sbjct: 236 VMILIMVFLVCWSPFFIY 253
>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +1
Query: 124 NGLFFAGQIRK--DSSEKSWYDELKKPSW 204
NG+F+ +I K +S+ W++E+KK SW
Sbjct: 1181 NGIFYNPKIAKLKESNPIRWWNEIKKLSW 1209
>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 496 YGTSNKPAVLLTLPNDSVVATAAPDSTEISMNASL 392
YG S +P +PN V +A P +T +S+ SL
Sbjct: 464 YGPSAQPPATALVPNPCYVPSAQPPATALSLPPSL 498
>SB_28917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 176 QDFSLLSLRI*PAKNNPLAHPPTFGRIIEPSAGQF 72
+DF +L +I + + H P FGR+ P+ G F
Sbjct: 147 EDFRILDSQISASSHYSTGHKPQFGRLRLPAGGAF 181
>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
Length = 1276
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 206 LPQSGYLVQLGLFSTAD-GICLLPH--LGGM*WFY*RCSPTSHIVRSTAATQLVLDSYFL 376
LP+ L L F T + LLP L + W + RCS S ++ +L+SY L
Sbjct: 720 LPEKAMLSALDTFITLHRNLSLLPRPILKNLLWLFARCSFLHKARPSLTTSETILESYVL 779
Query: 377 RIE 385
++
Sbjct: 780 ALK 782
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -3
Query: 565 PSPV*DCSSRCSKKGSWHISQAKYGTSNKPAVLLTLPNDSVVATAAPDSTEISMNASLKS 386
PS + S S H S+ TSNK V+ P +SVV P ++ S +S
Sbjct: 253 PSSLKSGSLTSSNDSKIHPSENDVITSNKRTVIKPTPTESVVTKPIPAEGAVTKQTSTES 312
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 454 NDSVVATAAPDSTEISMNASLKSFNPKKIGVQ-DQLSSSCTPYNV 323
NDSV + PD I MN SL+ N + + D++S + + +NV
Sbjct: 1277 NDSVKGVSRPDDFIIKMNLSLRLSNDARHEIAVDKISMTYSWHNV 1321
>SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
Length = 407
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -3
Query: 565 PSPV*DCSSRCSKKGSWHISQAKYGTSNKPAVLLTLPNDSVVATAAPDSTEISMNASLKS 386
PS + S S H S+ TSNK V+ P +SVV P ++ S +S
Sbjct: 5 PSSLKSGSLTSSNDSKIHPSENDVITSNKRTVIKPTPTESVVTKPIPAEGAVTKQTSTES 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,320,624
Number of Sequences: 59808
Number of extensions: 512933
Number of successful extensions: 1238
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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