Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20214
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.27 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   3.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 233 AGPNTHFGGVQLGFFNSS 180
           +GP    GGV+LG+FN S
Sbjct: 55  SGPEESSGGVELGWFNDS 72


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 529 YYIWKNNPKPVKGHKDPDNGIFAYALNID 615
           Y +W +      G+K+PD  I     NI+
Sbjct: 183 YRVWNHQLISYAGYKNPDGTIIGDPANIE 211


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 468 KTAGLLLVPYLAWLICQLPFLL 533
           KTAG L V    ++ C LPF +
Sbjct: 303 KTAGTLAVVVGGFVACWLPFFI 324


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 331 YNVRGRTASSVKPSHSSQMR*EAYPICCREQSK 233
           Y  RGR +S ++ S S   + E   +CC+E  +
Sbjct: 51  YACRGRCSSYLQVSGSKIWQMERSCMCCQESGE 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,572
Number of Sequences: 438
Number of extensions: 4648
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)