Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20214
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03230.1 68417.m00442 S-locus lectin protein kinase family pr...    30   1.5  
At2g23610.1 68415.m02817 esterase, putative similar to ethylene-...    30   1.5  
At1g60720.1 68414.m06835 hypothetical protein                          29   2.0  
At1g13540.1 68414.m01587 expressed protein                             29   2.0  

>At4g03230.1 68417.m00442 S-locus lectin protein kinase family
           protein contains Pfam domins, PF00069: Protein kinase
           domain, PF00954: S-locus glycoprotein family and
           PF01453: Lectin (probable mannose binding)
          Length = 852

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 125 MDCFLPVKSAKTAVKSPGMMN*RSQAGLPQSGYLVQLGLFSTADGICLLPHLGGM*WFY 301
           +DCF+ V+ +KT  K   ++N      L  +G   +LG F+         +LG   WFY
Sbjct: 17  LDCFVAVQDSKTLFKGSTLINDSHGETLVSAGQRFELGFFTPNGSSDERRYLG--IWFY 73


>At2g23610.1 68415.m02817 esterase, putative similar to
           ethylene-induced esterase [Citrus sinensis] GI:14279437,
           polyneuridine aldehyde esterase [Rauvolfia serpentina]
           GI:6651393; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 263

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 133 FFAGQIRKDSSEKSWYDEL---KKPSWTPPKWVFGP 231
           F   ++RK++S + W D +   +KP +    W+FGP
Sbjct: 121 FVWDKLRKETSREEWLDTVFTSEKPDFPSEFWIFGP 156


>At1g60720.1 68414.m06835 hypothetical protein
          Length = 289

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 238 SKLDQIPTLGESSLASLIHHTRTFHCCLCGFDRQKTIH 125
           S+LD++PT     LAS   H ++F CCLC  + +   H
Sbjct: 147 SQLDRLPT--RQRLASW-GHIQSFDCCLCTIETESRDH 181


>At1g13540.1 68414.m01587 expressed protein 
          Length = 381

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 151 RKDSSEKSWYDELKKPSWTPPKWVFGPAWTVLYSRW-DMPLTSSGRNVMVLLKMQ 312
           +K+ S + +Y     P   PP ++    WTV YSR+ D  L    + ++  L+ +
Sbjct: 150 QKEPSSRCYYATSVAPDGVPPWFLRKKEWTVEYSRFQDFELRDDAKGLITELRTE 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,823,321
Number of Sequences: 28952
Number of extensions: 371524
Number of successful extensions: 900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)