Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20212
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 111 7e-26
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 111 7e-26
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 3.4
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 3.4
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.0
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 25 7.9
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 7.9
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 111 bits (268), Expect = 7e-26
Identities = 49/66 (74%), Positives = 57/66 (86%)
Frame = +3
Query: 57 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 236
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 237 VGIDIF 254
V +DIF
Sbjct: 61 VALDIF 66
Score = 105 bits (253), Expect = 5e-24
Identities = 44/87 (50%), Positives = 67/87 (77%)
Frame = +2
Query: 254 HGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQL 433
+G+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G+LG ++
Sbjct: 67 NGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEI 125
Query: 434 RTDFDSGKELLCTVLKSCGEECVIASK 514
F+ GK+L+ TV+ + GEE +A +
Sbjct: 126 EEGFEEGKDLIITVVSAMGEEIALACR 152
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 111 bits (268), Expect = 7e-26
Identities = 49/66 (74%), Positives = 57/66 (86%)
Frame = +3
Query: 57 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 236
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 237 VGIDIF 254
V +DIF
Sbjct: 61 VALDIF 66
Score = 106 bits (255), Expect = 3e-24
Identities = 45/92 (48%), Positives = 68/92 (73%)
Frame = +2
Query: 254 HGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQL 433
+G+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G+LG ++
Sbjct: 67 NGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEI 125
Query: 434 RTDFDSGKELLCTVLKSCGEECVIASKQTQLS 529
FD G++L+ TV+ + GEE +A + S
Sbjct: 126 EEGFDEGRDLIITVVSAMGEETALACRDAPSS 157
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 293 NMDVPHVKREDYQLTDISDDGYL 361
NM +P+++ E Q+ D + D YL
Sbjct: 968 NMSIPYIRGEYVQMIDANQDNYL 990
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 149 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 244
+ + E +Q C N+ +N +A R SS GWD
Sbjct: 41 YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/53 (28%), Positives = 32/53 (60%)
Frame = +3
Query: 396 TSKSRMVTSAHSCVLTSTAARNCCAPC*NPAVRSASSPQSKHSSRQINHSAFI 554
+SKS +S+ S +S+++ + + + + +S++SP S SS + + S+FI
Sbjct: 175 SSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFI 227
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -1
Query: 504 MTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 391
+ S+P STV N+S P++ S + +P + S +L SS
Sbjct: 1254 LNSSTPITSSTVVNSSTPITSSTALNTSIPITSSSVLNSS 1293
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -1
Query: 504 MTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSSRRSPLSAI 367
+ S+P STV N+S P++ S + P + S +L SS S+I
Sbjct: 3138 LNSSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSI 3185
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 536 KPLSIYRVQTFNFYNHNSYLNVNI 607
KP SI + + NF++HN Y +++
Sbjct: 99 KPKSITKAEQGNFFSHNIYPKMHV 122
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 311 VKREDYQLTDISDDGYL 361
+KREDY+LT ++ GYL
Sbjct: 91 IKREDYELTLCANCGYL 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,111
Number of Sequences: 5004
Number of extensions: 63402
Number of successful extensions: 241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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