Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20209
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.9  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.9  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 684 RRSTAAEVKDKYISFSSTLFVKTVSNRSSSGFIDDSENVQ 565
           ++STA  VKD Y  + +   V   + RS    ++D E ++
Sbjct: 53  KKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLLNDPELIK 92


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 526 QRQATKDAGTISGLNVLRIINEPTAAAIAYG 618
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/49 (22%), Positives = 20/49 (40%)
 Frame = +1

Query: 427  FHGAYENEGNCRSLSRQNCAECSYHGSPYFNDSQRQATKDAGTISGLNV 573
            F   Y++  NC     Q  ++   +G+PY +   R +       S  N+
Sbjct: 1803 FSPEYDDPANCAPEEDQYGSQYGQYGAPYDHYGSRGSVGRRSVGSARNI 1851


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 72 PFCIFNQSCYLFLKQ 28
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,874
Number of Sequences: 438
Number of extensions: 5173
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)