Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20205
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 74 2e-14
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 51 2e-07
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 49 8e-07
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.014
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.014
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 31 0.23
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.30
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.70
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 0.92
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 2.1
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.1
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 26 4.9
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 4.9
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 6.5
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 8.6
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 8.6
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 8.6
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 74.1 bits (174), Expect = 2e-14
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +3
Query: 261 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 434
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 435 RECDEARN 458
R+C + N
Sbjct: 71 RDCPSSPN 78
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Frame = +3
Query: 228 HSARVRTEPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK--- 398
H AR T+ CYNCN+TGH A C E +E +TCY C +GH+ R+CP
Sbjct: 27 HQARECTKGS--ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVRDCPSSPNPRQ 81
Query: 399 --TCYVCGKPGHISREC 443
CY CG+ GHI+R+C
Sbjct: 82 GAECYKCGRVGHIARDC 98
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/80 (40%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 16 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCKEE 192
S P + CYKC R GH AR+C G S G +R C+ C GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 193 ADRCYRCNGTGHIARECAQS 252
+CY C GH + EC Q+
Sbjct: 135 V-KCYSCGKIGHRSFECQQA 153
Score = 67.3 bits (157), Expect = 2e-12
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRES--------ATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 422
CY C + GHIAR+C G++S + CY C GH +R+C G K CY CGK
Sbjct: 85 CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSCGKI 143
Query: 423 GHISRECDEA 452
GH S EC +A
Sbjct: 144 GHRSFECQQA 153
Score = 64.9 bits (151), Expect = 1e-11
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 219
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 220 TGHIARECAQSP 255
GH+ R+C SP
Sbjct: 66 AGHLVRDCPSSP 77
Score = 64.5 bits (150), Expect = 2e-11
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 40 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC-----KEEADRC 204
S+CY CN+TGH A ECT+ +Q + C+ C GH RDC + C
Sbjct: 36 SICYNCNQTGHKASECTE----------PQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85
Query: 205 YRCNGTGHIAREC 243
Y+C GHIAR+C
Sbjct: 86 YKCGRVGHIARDC 98
Score = 62.9 bits (146), Expect = 5e-11
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Frame = +3
Query: 228 HSARVRTEPD-EPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC-PDGTKT 401
H A TEP E +CY C GH+ R+CP CY C + GHI+R+C +G ++
Sbjct: 46 HKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQS 105
Query: 402 ------------CYVCGKPGHISREC 443
CY CG GH +R+C
Sbjct: 106 GGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 264 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 437
+CY C GH AR+C G + CY+C K GH S C + + CY C +PGHI+
Sbjct: 117 NCYACGSYGHQARDCTMGVK------CYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAV 170
Query: 438 EC 443
C
Sbjct: 171 NC 172
Score = 46.4 bits (105), Expect = 4e-06
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 127 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQ 249
R +C+ C GH AR+C + CY CN TGH A EC +
Sbjct: 14 RPGPRCYNCGENGHQAREC-TKGSICYNCNQTGHKASECTE 53
Score = 34.7 bits (76), Expect = 0.014
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 4 HEEFSKPIAMSSSVCYKCNRTGHFARECT 90
H F A +CYKCN+ GH A CT
Sbjct: 145 HRSFECQQASDGQLCYKCNQPGHIAVNCT 173
Score = 31.9 bits (69), Expect = 0.099
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 222 GAHSARVRTEPDEPSCYNCNKTGHIARNC 308
G S + D CY CN+ GHIA NC
Sbjct: 144 GHRSFECQQASDGQLCYKCNQPGHIAVNC 172
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 50.8 bits (116), Expect = 2e-07
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 246 TEPDEPS-CYNCNKTGHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCGK 419
++P E C+NC GHI+++CP C C HIS CP TK C CG
Sbjct: 81 SDPSESIVCHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGL 132
Query: 420 PGHISRECDEAR 455
GHI+ C E R
Sbjct: 133 LGHIAARCSEPR 144
Score = 39.1 bits (87), Expect = 7e-04
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Frame = +1
Query: 37 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 198
S VC+ C GH +++C T G + S +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 199 R----CYRCNGTGHIAREC 243
R C C+ H + C
Sbjct: 146 RGPRVCRTCHTDTHTSSTC 164
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 315 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGK-PGHISREC 443
G S + C+NC +GHIS++CP C CG HIS C
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCGAIDDHISVRC 121
Score = 28.7 bits (61), Expect = 0.92
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 154 NRTGHFARDCKEEADRCYRCNGTGHIAREC 243
+R +F D E+ C+ C G GHI+++C
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDC 102
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/55 (25%), Positives = 19/55 (34%)
Frame = +3
Query: 228 HSARVRTEPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 392
H R+ CYNC H +C R + ++ C NCP G
Sbjct: 176 HPVRIDVSEVRKFCYNCASDEHFGDDCTLPSRSNYPESTAFC------EANCPSG 224
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 48.8 bits (111), Expect = 8e-07
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 237 RVRTEPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC----PDGTKTC 404
R+ + C+ C + GHI ++CPE + C+ C H C P C
Sbjct: 69 RINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAKC 126
Query: 405 YVCGKPGHISRECDE 449
++C + GH+S +C++
Sbjct: 127 FICHENGHLSGQCEQ 141
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 127 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQ 249
R R+K CF C + GH +DC E D C+RC H C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSK 117
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 213
C+ C + GH ++C + ++D+ CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDNV-----SICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 214 NGTGHIARECAQSP 255
+ GH++ +C Q+P
Sbjct: 130 HENGHLSGQCEQNP 143
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +1
Query: 40 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE-------EAD 198
S+C++C H C++ G + + KCF C+ GH + C++ +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 199 RCYRCNGTGHIARECAQ 249
C C+ H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 16 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE 189
SK + + C+ C+ GH + +C Q G + C C+ H A+DC +
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ-----NPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 28.7 bits (61), Expect = 0.92
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 396 KTCYVCGKPGHISRECDEARN 458
K C+ C + GHI ++C EA++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 386
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 321 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEARN*PQPP 473
R+ Q C NC GH +CP+ C CG GHI+R+C R+ QPP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357
Score = 35.1 bits (77), Expect = 0.011
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Frame = +1
Query: 130 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIAREC 243
+ + C C GH DC E + C C GHIAR+C
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC 349
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 37 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 183
+ VC C GH +C + R + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCPE-----RIN--HTMNIVCRHCGSIGHIARDC 349
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.014
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 366 HISRNCPDGTKTCYVCGKPGHISREC 443
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 40 SVCYKCNRTGHFAREC 87
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +1
Query: 166 HFARDCKEEADRCYRCNGTGHIAREC 243
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.014
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 366 HISRNCPDGTKTCYVCGKPGHISREC 443
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 40 SVCYKCNRTGHFAREC 87
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +1
Query: 166 HFARDCKEEADRCYRCNGTGHIAREC 243
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = +3
Query: 231 SARVRTEPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCY 407
S + ++P+ N + N + T TC NC ++ + R PDG C
Sbjct: 598 SFNINKNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCN 657
Query: 408 VCG 416
CG
Sbjct: 658 ACG 660
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.30
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +3
Query: 303 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 413
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.70
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 318 GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 422
GR+ T+ C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +3
Query: 249 EPDEPSCYNCNKTGHIARN--CPEGGR 323
+P C NC + GH+ N CP GR
Sbjct: 941 KPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 28.7 bits (61), Expect = 0.92
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 22 PIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 177
P A +V K N GH E G V +S + K + +R G F+R
Sbjct: 384 PKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSR 435
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 124 NRQREKCFKCNRTGHFARDCKEEA 195
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 410 VRQARPHLARVRRGAELAAATLSPLQSTMY--IMMHARTISKGRHARHTITDYSTDAERR 583
VR + +V++ ++L S L S + + H + + K + T+ DY+ ++R
Sbjct: 215 VRDLKKLEKKVKKRSDLGNKYESTLNSLINKSVKKHNKLVKKHKPLPSTL-DYTAYVKKR 273
Query: 584 PRHRLK 601
P HRLK
Sbjct: 274 PTHRLK 279
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 237 RVRTEPDEPSCYNCNKTGHIARNCPEGGRESATQ 338
R++ + +P C NC KT R C EG SA Q
Sbjct: 43 RIKCDETKPFCLNCTKTN---REC-EGYPNSAAQ 72
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 231 SARVRTEPDEPS--CYNCNKTGHIARNCP 311
+A V +P P CY C + GH + CP
Sbjct: 171 AASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 342 CYNCNKSGHISRNCPDGTKTCYVCGKP 422
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 142 CFKCNRTGHFARDCKEEADRCY 207
C++C + GH+ + C AD Y
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY 206
Score = 25.4 bits (53), Expect = 8.6
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +1
Query: 43 VCYKCNRTGHFAREC 87
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 626 YKSTVEPHSSVCGADAALHLYCNRLSCVARGVL 528
Y +T EP ++ GA+ L + R +A+G+L
Sbjct: 50 YDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLL 82
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 134 VRSASSATAQDTLRGIARKRLTVA 205
VRSA S+ Q T R +A+ +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 315 GGRESATQTCYNCNKSG 365
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 384 PDGTKTCYVCGKPGHISRECDEARN 458
PDGT YV +PG IS +A N
Sbjct: 64 PDGTTMVYVFPRPGTISPWSSKATN 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,657
Number of Sequences: 5004
Number of extensions: 49603
Number of successful extensions: 232
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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