Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20205
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 72 5e-13
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 65 4e-11
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 63 2e-10
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 62 5e-10
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 58 5e-09
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 56 3e-08
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 52 3e-07
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 51 7e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 9e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 9e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 9e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 9e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 9e-07
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 47 2e-05
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 46 3e-05
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 42 4e-04
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 40 0.002
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.004
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.004
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.005
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.007
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.012
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.037
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.065
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.15
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.20
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.20
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 33 0.20
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.35
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 32 0.35
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 32 0.46
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.46
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.61
At5g27220.1 68418.m03247 protein transport protein-related low s... 31 0.61
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 31 0.61
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 31 0.81
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 31 0.81
At3g31950.1 68416.m04046 hypothetical protein 31 0.81
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 31 1.1
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 31 1.1
At5g51300.2 68418.m06360 splicing factor-related contains simila... 30 1.4
At5g51300.1 68418.m06359 splicing factor-related contains simila... 30 1.4
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.4
At4g17410.1 68417.m02607 expressed protein 30 1.4
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.4
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.9
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.9
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.9
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.5
At5g47430.1 68418.m05844 expressed protein 29 2.5
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 2.5
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 2.5
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 2.5
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 29 3.3
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 3.3
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 3.3
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 3.3
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 4.3
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 29 4.3
At5g36060.1 68418.m04344 hypothetical protein 28 5.7
At5g21140.1 68418.m02524 expressed protein 28 5.7
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 5.7
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 5.7
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 5.7
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 28 5.7
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 28 5.7
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 28 5.7
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 27 9.9
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 71.7 bits (168), Expect = 5e-13
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC--KEEADR-CYRCN 216
CY C GHFAR+CTQ C+ C GH ARDC K + R CY+C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 217 GTGHIARECAQ 249
G+GH+AR+C Q
Sbjct: 260 GSGHLARDCDQ 270
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/82 (39%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Frame = +1
Query: 40 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------ 183
S CY C GH +++C GG +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 184 KEEADRCYRCNGTGHIARECAQ 249
K D CY C GH+AR+C Q
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQ 181
Score = 65.7 bits (153), Expect = 3e-11
Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA---------- 195
CY C TGHFAR+CT G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 196 ----DRCYRCNGTGHIARECAQ 249
D CY C GH AR+C Q
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQ 215
Score = 65.7 bits (153), Expect = 3e-11
Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 14/81 (17%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDS--GFNRQREKCFKCNRTGHFARDCKEE--------- 192
CY C GH AR+CTQ V + D + C+ C GHFARDC ++
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSG 225
Query: 193 ---ADRCYRCNGTGHIARECA 246
+ CY C G GHIAR+CA
Sbjct: 226 GGGSGTCYSCGGVGHIARDCA 246
Score = 64.1 bits (149), Expect = 9e-11
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Frame = +3
Query: 264 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPD-------GTKTCYVCGKP 422
+CY+C GHIAR+C + ++ CY C SGH++R+C CY CGK
Sbjct: 231 TCYSCGGVGHIARDCAT--KRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKE 288
Query: 423 GHISREC 443
GH +REC
Sbjct: 289 GHFAREC 295
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPE----GGRESA---TQTCYNCNKSGHISRNCP---DGTKTCYVCG 416
CY C GH AR+C + G S + TCY+C GHI+R+C ++ CY CG
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 417 KPGHISRECDE 449
GH++R+CD+
Sbjct: 260 GSGHLARDCDQ 270
Score = 60.9 bits (141), Expect = 9e-10
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 19/80 (23%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGG-------RESATQTCYNCNKSGHISRNCPD------------ 389
CYNC + GHI+++C GG R + CYNC +GH +R+C
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 390 GTKTCYVCGKPGHISRECDE 449
G CY CG GH++R+C +
Sbjct: 162 GNDGCYTCGDVGHVARDCTQ 181
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 21/106 (19%)
Frame = +3
Query: 222 GAHSARVRTEPDEPSCYNCNKTGHIARNCPE---------GGRESATQTCYNCNKSGHIS 374
G R T+ CY C GH+AR+C + G + CY C GH +
Sbjct: 151 GNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFA 210
Query: 375 RNCPD------------GTKTCYVCGKPGHISRECDEARN*PQPPC 476
R+C G+ TCY CG GHI+R+C R P C
Sbjct: 211 RDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQ-PSRGC 255
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 195
CY+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Frame = +3
Query: 342 CYNCNKSGHISRNC------------PDGTKTCYVCGKPGHISRECDEARN 458
CYNC + GHIS++C G + CY CG GH +R+C A N
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGN 152
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 12/49 (24%)
Frame = +1
Query: 142 CFKCNRTGHFARDCK--------EEADR----CYRCNGTGHIARECAQS 252
C+ C GH ++DC E R CY C TGH AR+C +
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSA 150
Score = 35.1 bits (77), Expect = 0.050
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 34 SSSVCYKCNRTGHFARECT 90
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 390 GTKTCYVCGKPGHISREC 443
G CY CG+ GHIS++C
Sbjct: 98 GGSGCYNCGELGHISKDC 115
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 255 DEPSCYNCNKTGHIARNC 308
++ +CY C K GH AR C
Sbjct: 278 NDNACYKCGKEGHFAREC 295
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP-----DGTK--TCYVCGKP 422
C C + GH +NCPE ES+ + CYNC +GH +CP GTK +C++C
Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQ 160
Query: 423 GHISRECDEARN 458
GHIS+ C E ++
Sbjct: 161 GHISKNCPENKH 172
Score = 59.3 bits (137), Expect = 3e-09
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESATQ--TCYNCNKSGHISRNCPDGTK-------TCYVCGK 419
CYNC TGH +CP + T+ +C+ C GHIS+NCP+ C VCG
Sbjct: 127 CYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGS 186
Query: 420 PGHISRECDEARN 458
H+ ++C + N
Sbjct: 187 VAHLVKDCPDKFN 199
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +3
Query: 228 HSARVRTEPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGT---- 395
H RV C+ C+ HIA+ CPE + C C + GH +NCP+
Sbjct: 63 HPLRVPGMKPGEGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESS 122
Query: 396 --KTCYVCGKPGHISREC 443
K CY CG GH C
Sbjct: 123 EKKLCYNCGDTGHSLSHC 140
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = +1
Query: 37 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD------ 198
+ +C +C R GH + C + + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 199 -RCYRCNGTGHIARECAQS 252
C+ C G GHI++ C ++
Sbjct: 152 ASCFICKGQGHISKNCPEN 170
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 264 SCYNCNKTGHIARNCPEG--GRESATQTCYNCNKSGHISRNCPD 389
SC+ C GHI++NCPE G C C H+ ++CPD
Sbjct: 153 SCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPD 196
Score = 36.7 bits (81), Expect = 0.016
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Frame = +1
Query: 43 VCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE-------ADR 201
+CY C TGH C D G + CF C GH +++C E
Sbjct: 126 LCYNCGDTGHSLSHCPYP---MEDGG--TKFASCFICKGQGHISKNCPENKHGIYPMGGC 180
Query: 202 CYRCNGTGHIAREC 243
C C H+ ++C
Sbjct: 181 CKVCGSVAHLVKDC 194
Score = 35.5 bits (78), Expect = 0.037
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +3
Query: 342 CYNCNKSGHISRNCPDGT-----KTCYVCGKPGHISRECDEARN*PQPPCLPYN 488
C+ C+ HI++ CP+ + K C C + GH + C E N L YN
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYN 129
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +1
Query: 136 EKCFKCNRTGHFARDCKEEAD-----RCYRCNGTGHIARECAQ 249
E CF C+ H A+ C E+++ C +C GH + C +
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPE 116
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------------- 186
CY C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 187 --EEADRCYRCNGTGHIARECAQS 252
D CY C G GH AR+C Q+
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQN 214
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSR---DSGFNRQREKCFKCNRTGHFARDCKEE-------- 192
CY C GH A++C G +R G + C+ C GHFARDC++
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 193 ADRCYRCNGTGHIAREC 243
CY C G GHIA+ C
Sbjct: 223 GSTCYTCGGVGHIAKVC 239
Score = 60.9 bits (141), Expect = 9e-10
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 14/74 (18%)
Frame = +3
Query: 264 SCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHISRNCP----------DGTKT 401
+CY C GHIA+ C P GG + CY C +GH++R+C G+
Sbjct: 225 TCYTCGGVGHIAKVCTSKIPSGGGGGG-RACYECGGTGHLARDCDRRGSGSSGGGGGSNK 283
Query: 402 CYVCGKPGHISREC 443
C++CGK GH +REC
Sbjct: 284 CFICGKEGHFAREC 297
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESAT---QTCYNCNKSGHISRNCPD--------GTKTCYVC 413
CY C GH AR+C + G + TCY C GHI++ C G + CY C
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYEC 257
Query: 414 GKPGHISRECD 446
G GH++R+CD
Sbjct: 258 GGTGHLARDCD 268
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------ADR 201
CY C GHFAR+C Q G + G C+ C GH A+ C +
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGG----GSTCYTCGGVGHIAKVCTSKIPSGGGGGGRA 253
Query: 202 CYRCNGTGHIAREC 243
CY C GTGH+AR+C
Sbjct: 254 CYECGGTGHLARDC 267
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +1
Query: 40 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 192
S CY C GH A+ CT + S G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 193 -ADRCYRCNGTGHIAREC 243
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 18/77 (23%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEG----------GRESATQTCYNCNKSGHISRNCPD--------G 392
CY+C + GH+A++C G GR S CY C GH +R+C G
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 393 TKTCYVCGKPGHISREC 443
TCY CG GHI++ C
Sbjct: 223 GSTCYTCGGVGHIAKVC 239
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Frame = +1
Query: 34 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKEEAD- 198
S C+ C GH A++C G G S G R+ +C+ C GHFARDC++
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 199 ----------RCYRCNGTGHIAREC 243
CY C GH+A++C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDC 176
Score = 54.8 bits (126), Expect = 6e-08
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 195
CY+C TGH AR+C + G S SG KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Frame = +3
Query: 243 RTEPDEPSCYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGT--- 395
R E CY C GH AR+C + GG + CY+C + GH++++C G+
Sbjct: 124 RRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGN 183
Query: 396 ------------KTCYVCGKPGHISREC 443
CY+CG GH +R+C
Sbjct: 184 RYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 22/82 (26%)
Frame = +3
Query: 264 SCYNCNKTGHIARNCP----------EGGRESATQ-TCYNCNKSGHISRNCPD------- 389
+C+NC + GH+A++C GGR S + CY C GH +R+C
Sbjct: 95 NCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSG 154
Query: 390 ----GTKTCYVCGKPGHISREC 443
G + CY CG+ GH++++C
Sbjct: 155 GGGGGGRPCYSCGEVGHLAKDC 176
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 16/65 (24%)
Frame = +1
Query: 106 SRDSGFNRQREKCFKCNRTGHFARDCKEEA----------------DRCYRCNGTGHIAR 237
SR SG N CF C GH A+DC + CY C GH AR
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143
Query: 238 ECAQS 252
+C QS
Sbjct: 144 DCRQS 148
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 16/66 (24%)
Frame = +3
Query: 303 NCPEGGRESATQTCYNCNKSGHISRNCPDGT----------------KTCYVCGKPGHIS 434
N E + C+NC + GH++++C G+ CY+CG GH +
Sbjct: 83 NKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFA 142
Query: 435 RECDEA 452
R+C ++
Sbjct: 143 RDCRQS 148
Score = 32.3 bits (70), Expect = 0.35
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 37 SSVCYKCNRTGHFARECT 90
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 61.7 bits (143), Expect = 5e-10
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 19/88 (21%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSG-------FN-RQREKCFKCNRTGHFARDC------ 183
CY+C + GH C + S ++ FN R+ +C++C GHFAR+C
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 184 -----KEEADRCYRCNGTGHIARECAQS 252
+E CYRCNG+GH AREC S
Sbjct: 347 STSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 58.4 bits (135), Expect = 5e-09
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +1
Query: 37 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 183
+S CY+C GHFAREC +S G + C++CN +GHFAR+C
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFAREC 371
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +3
Query: 237 RVRTEPDEPSCYNCNKTGHIARNCPEG-------GRESATQTCYNCNKSGHISRNCPDGT 395
R+ + CY C + GH AR CP GRES T CY CN SGH +R CP+ +
Sbjct: 317 RLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQT-LCYRCNGSGHFARECPNSS 375
Query: 396 K 398
+
Sbjct: 376 Q 376
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 264 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 443
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K GH +++C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 444 -DEARN 458
D+ +N
Sbjct: 224 PDKYKN 229
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 225
CY C GH + C ++R+ CF C H A+ C + D CY C TG
Sbjct: 168 CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQCSKGHD-CYICKKTG 217
Query: 226 HIAREC 243
H A++C
Sbjct: 218 HRAKDC 223
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 26/86 (30%)
Frame = +3
Query: 264 SCYNCNKTGHIARNC-----PEGGRESAT----------QTCYNCNKSGHISRNCPDGTK 398
SCY C + GH C +SAT CY C + GH +R CP+ +
Sbjct: 286 SCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSS 345
Query: 399 T-----------CYVCGKPGHISREC 443
CY C GH +REC
Sbjct: 346 ISTSHGRESQTLCYRCNGSGHFAREC 371
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRE-SATQTCYNCNKSGHISRNCP-DGTK------TCYVCGKP 422
CY C KTGH A++CP+ + S C C GH C + +K CY+C
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSF 269
Query: 423 GHI 431
GH+
Sbjct: 270 GHL 272
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 34 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 159
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
Score = 35.9 bits (79), Expect = 0.028
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRE-SATQTCYNCNKSGHISRNC--------------PD---- 389
CY C GH+ C E G S +CY C + GH C P+
Sbjct: 263 CYICKSFGHLC--CVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFN 320
Query: 390 --GTKTCYVCGKPGHISREC 443
CY CG+ GH +REC
Sbjct: 321 SREASECYRCGEEGHFAREC 340
Score = 35.1 bits (77), Expect = 0.050
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Frame = +1
Query: 4 HEEFSKPIAMSS-SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD 180
H F+ P C+ C H A++C++G C+ C +TGH A+D
Sbjct: 176 HTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG-------------HDCYICKKTGHRAKD 222
Query: 181 CKEEADR------CYRCNGTGH 228
C ++ C RC GH
Sbjct: 223 CPDKYKNGSKGAVCLRCGDFGH 244
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRES 329
CY CN +GH AR CP + S
Sbjct: 358 CYRCNGSGHFARECPNSSQVS 378
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 255 DEPSCYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 431
+E C++C K+GH AR+C R + C NC K GH++ +C + K C C GHI
Sbjct: 110 NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-DKACKNCRTSGHI 168
Query: 432 SREC 443
+R+C
Sbjct: 169 ARDC 172
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/62 (38%), Positives = 33/62 (53%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECD 446
C NC GHIA C +A C+NC + GH++ NC C+ CGK GH +R+C
Sbjct: 76 CNNCGLPGHIAAEC------TAESRCWNCREPGHVASNC-SNEGICHSCGKSGHRARDCS 128
Query: 447 EA 452
+
Sbjct: 129 NS 130
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Frame = +1
Query: 1 RHEEFSKPIAMSSSVCYKCNRTGHFARECT------QGGVVSRDSGFNRQREKCFKCNRT 162
R E + ++C C R GHFAR+C+ G+ + +C+ C
Sbjct: 42 RREREPRRAFSQGNLCNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRCWNCREP 101
Query: 163 GHFARDCKEEADRCYRCNGTGHIARECAQS 252
GH A +C E C+ C +GH AR+C+ S
Sbjct: 102 GHVASNCSNEG-ICHSCGKSGHRARDCSNS 130
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/74 (37%), Positives = 39/74 (52%)
Frame = +1
Query: 34 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 213
+ +C+ C ++GH AR+C+ SR +G R CFK GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTNDK-ACKNC 162
Query: 214 NGTGHIARECAQSP 255
+GHIAR+C P
Sbjct: 163 RTSGHIARDCRNDP 176
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +3
Query: 258 EPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG------TKTCYVCGK 419
E C+NC + GH+A NC G C++C KSGH +R+C + + C C K
Sbjct: 92 ESRCWNCREPGHVASNCSNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFK 145
Query: 420 PGHISREC 443
GH++ +C
Sbjct: 146 QGHLAADC 153
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 443
C NC + GH AR+C S C NC GHI+ C ++ C+ C +PGH++ C
Sbjct: 57 CNNCKRPGHFARDC------SNVSVCNNCGLPGHIAAECTAESR-CWNCREPGHVASNC 108
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 255 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 392
++ +C NC +GHIAR+C C C+ SGH++R+CP G
Sbjct: 155 NDKACKNCRTSGHIARDCRN------DPVCNICSISGHVARHCPKG 194
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = +3
Query: 255 DEPSCYNCNKTGHIARNCPEGG---RESATQTCYNCNKSGHISRNCPD--GTKT---CYV 410
++P C C+ +GH+AR+CP+G + ++ + G +SR D G C+
Sbjct: 174 NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMSRDREGVSAMIICHN 233
Query: 411 CGKPGHISRECDEAR 455
CG GH + EC AR
Sbjct: 234 CGGRGHRAYECPSAR 248
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 43 VCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR--CYRCN 216
VC C+ +GH AR C +G D G +R R+ + +RD + + C+ C
Sbjct: 177 VCNICSISGHVARHCPKGDSNYSDRG-SRVRDGGMQRGGLSRMSRDREGVSAMIICHNCG 235
Query: 217 GTGHIAREC 243
G GH A EC
Sbjct: 236 GRGHRAYEC 244
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 19/91 (20%)
Frame = +1
Query: 28 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDC----- 183
A + + CYKC + GH+AR+CT V D+G + CFKC + GH++RDC
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSG 288
Query: 184 -----------KEEADRCYRCNGTGHIAREC 243
+ CY+C GH +R+C
Sbjct: 289 NPKYEPGQMKSSSSSGECYKCGKQGHWSRDC 319
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +1
Query: 1 RHEEFSKPIAMSSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNRTGH 168
++E + SS CYKC + GH++R+CT Q SG + C+KC + GH
Sbjct: 291 KYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGH 350
Query: 169 FARDCKEEA 195
++RDC A
Sbjct: 351 WSRDCTSPA 359
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Frame = +3
Query: 261 PSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCPDGTKT-----------C 404
P+ Y+ K + + G + + T T CY C K GH +R+C + T C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
Query: 405 YVCGKPGHISREC 443
+ CGKPGH SR+C
Sbjct: 271 FKCGKPGHWSRDC 283
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Frame = +3
Query: 237 RVRTEPDEPSCYNCNKTGHIARNCP--------EGGRESATQT---CYNCNKSGHISRNC 383
++++ CY C K GH +R+C + G+ +T + CY C K+GH SR+C
Sbjct: 296 QMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDC 355
Query: 384 PDGTKTCYVCGK 419
+T GK
Sbjct: 356 TSPAQTTNTPGK 367
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 12/49 (24%)
Frame = +1
Query: 142 CFKCNRTGHFARDCKEEADR-----------CYRCNGTGHIAREC-AQS 252
C+KC + GH+ARDC ++D C++C GH +R+C AQS
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS 287
Score = 35.5 bits (78), Expect = 0.037
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 34 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE 138
S+ CYKC + GH++R+CT + G RQR+
Sbjct: 338 STGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 231 SARVRTEPDEPSCYNCNKTGHIARNCPEGGRESAT 335
S + ++ CY C K GH +R+C + + T
Sbjct: 330 SGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNT 364
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +3
Query: 216 RHGAHSARVRTEPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPDG 392
R ++ R R + D +CY C K GH AR+C + +A TCY C++ GH S CP+
Sbjct: 19 RASYNNDRRRNDYDPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNK 78
Query: 393 TKT-------CYVCGKPGH 428
CY CG H
Sbjct: 79 RTDQVNPKGHCYWCGNQDH 97
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +3
Query: 336 QTCYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRECDEAR 455
+ CY C K GH +R+C T+ TCY C + GH S C R
Sbjct: 34 RACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKR 79
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 225
CYKC + GHFAR C VV++ + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 226 H 228
H
Sbjct: 88 H 88
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNC-----PDGTKTCYVCGKPGH 428
CY CN GH+ C E G +S T +CY C + GH C + +C++CG+ GH
Sbjct: 55 CYVCNSLGHLC--CIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGH 112
Query: 429 ISREC 443
+C
Sbjct: 113 FEHQC 117
Score = 43.2 bits (97), Expect = 2e-04
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 264 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCY 407
SCY C + GH C +S + +C+ C + GH C + C+
Sbjct: 78 SCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +1
Query: 34 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 201
SSSV ++ N GHF +C V +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 202 CYRCNGTGHIARECAQS 252
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCY 207
CY+C + GH C G DS CF C R GHF C C+
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 318 GRESATQTCYNCNKSGHISRNCPDGTK 398
GRE+ + CY C GHI+R+CP+ ++
Sbjct: 190 GRETR-RLCYECKGKGHIARDCPNSSQ 215
Score = 32.3 bits (70), Expect = 0.35
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Frame = +1
Query: 37 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR----- 201
+ VC +C GH C S + + KC+ CN GH C E
Sbjct: 25 AEVCLRCGGFGHDMTLCKY-----EYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTV 77
Query: 202 -CYRCNGTGHIARECAQ 249
CYRC GH C +
Sbjct: 78 SCYRCGQLGHTGLACGR 94
Score = 31.1 bits (67), Expect = 0.81
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGR 323
CY C GHIAR+CP +
Sbjct: 197 CYECKGKGHIARDCPNSSQ 215
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Frame = +3
Query: 288 GHIARNCPEGGRE-----SATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 443
GH CP+ S + + N S + + + CY C GHI+R+C
Sbjct: 154 GHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDC 210
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Frame = +1
Query: 130 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHI 231
+ E C +C GH CK E +CY CN GH+
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL 64
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 18/67 (26%)
Frame = +3
Query: 261 PSCYNCNKTGHIARNC--------PEGGRESATQTCYNCN----------KSGHISRNCP 386
PSC+ C + GH C PE E Q + + + GH CP
Sbjct: 102 PSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTREEEEGHFEHQCP 161
Query: 387 DGTKTCY 407
D + C+
Sbjct: 162 DSSSVCF 168
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 43 VCYKCNRTGHFARECTQGGVV 105
+CY+C GH AR+C V
Sbjct: 196 LCYECKGKGHIARDCPNSSQV 216
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 139 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 255
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 47.6 bits (108), Expect = 9e-06
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = +3
Query: 285 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 437
T +R P G R++ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 438 ECDEARN*PQP 470
C +N P P
Sbjct: 135 NC---KNSPSP 142
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 252 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 383
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 37 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 186
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 139 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 255
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 47.6 bits (108), Expect = 9e-06
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = +3
Query: 285 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 437
T +R P G R++ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 438 ECDEARN*PQP 470
C +N P P
Sbjct: 94 NC---KNSPSP 101
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 252 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 383
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 37 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 186
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 139 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 255
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 252 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 398
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +3
Query: 285 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 437
T +R P G R+ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 438 EC 443
C
Sbjct: 94 NC 95
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 210
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 228 HSARVRTEPD-EPSCYNCNKTGHIARNCPEGGRESATQTCYN 350
H AR T D + CY C + GHI RNC ++ Y+
Sbjct: 68 HWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 139 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 255
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 252 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 398
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +3
Query: 285 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 437
T +R P G R+ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 438 EC 443
C
Sbjct: 105 NC 106
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 210
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 228 HSARVRTEPD-EPSCYNCNKTGHIARNCPEGGRESATQTCYN 350
H AR T D + CY C + GHI RNC ++ Y+
Sbjct: 79 HWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 139 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 255
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 252 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 398
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +3
Query: 285 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 437
T +R P G R+ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 438 EC 443
C
Sbjct: 135 NC 136
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 210
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 228 HSARVRTEPD-EPSCYNCNKTGHIARNCPEGGRESATQTCYN 350
H AR T D + CY C + GHI RNC ++ Y+
Sbjct: 109 HWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGV-VSRDSGFNRQRE-----------KCFKCNRTGHFARDC 183
C+KC GH AREC+QGG S G R C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 264 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 443
SC+ C + GH+AR C +GG + SG G +CY CG+ GH +R+C
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGG 99
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 34.7 bits (76), Expect = 0.065
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 390 GTKTCYVCGKPGHISRECDE 449
G +C+ CG+PGH++REC +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
Score = 34.7 bits (76), Expect = 0.065
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 264 SCYNCNKTGHIARNCPEGG 320
SCY+C ++GH AR+C GG
Sbjct: 181 SCYSCGESGHFARDCTSGG 199
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 94 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKE 189
GG S G CFKC GH AR+C +
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQ 153
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 202 CYRCNGTGHIARECAQSPXXXXXXXXXXXXXXHGTVPRGGGSL 330
C++C GH+AREC+Q G GGG L
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGL 180
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 288 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 392
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESATQ-TCYNCNKSGHISRNCP-------DGTKT----CYV 410
C NC + GH CPE G + + C C GH R CP G T C +
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGI 325
Query: 411 CGKPGHISREC 443
CG+ GH SR C
Sbjct: 326 CGERGHNSRTC 336
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +3
Query: 342 CYNCNKSGHISRNCPD-GTKT-----CYVCGKPGHISRECDEARN 458
C NC + GH CP+ GT C CG GH R C ++++
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKS 310
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQG-GVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 219
C C GH R C + +V++ G + + KC C GH +R C++ C+G
Sbjct: 292 CRGCGGKGHNRRTCPKSKSIVTK--GISTRYHKCGICGERGHNSRTCRKPTGVNPSCSG 348
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = +1
Query: 142 CFKCNRTGHFARDCKE---EADRCYRCNGTG---HIARECAQS 252
C C + GH C E ADR +RC G G H R C +S
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKS 308
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 40 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEEADRCYRC 213
S CYKC GH AR+C++GG G + G+ R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 214 NGTGHIAREC 243
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESATQTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 419
CY C + GH+AR+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 420 PGHISREC 443
GH +R+C
Sbjct: 191 SGHFARDC 198
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGG 99
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 36.7 bits (81), Expect = 0.016
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 264 SCYNCNKTGHIARNCPEGGR 323
SCY+C ++GH AR+C GGR
Sbjct: 184 SCYSCGESGHFARDCTSGGR 203
Score = 35.1 bits (77), Expect = 0.050
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 390 GTKTCYVCGKPGHISRECDE 449
G CY CG+PGH++R+C E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 34.3 bits (75), Expect = 0.087
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 94 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKE 189
GG R G R C+KC GH ARDC E
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSE 146
Score = 31.1 bits (67), Expect = 0.81
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 315 GGRESATQTCYNCNKSGHISRNCPDG 392
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
Score = 31.1 bits (67), Expect = 0.81
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 339 TCYNCNKSGHISRNCPDG 392
+CY+C +SGH +R+C G
Sbjct: 184 SCYSCGESGHFARDCTSG 201
Score = 29.1 bits (62), Expect = 3.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 202 CYRCNGTGHIARECAQ 249
CY+C GH+AR+C++
Sbjct: 131 CYKCGEPGHMARDCSE 146
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +3
Query: 339 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISREC 443
TCY+C + HI+ +CP T K+C++C H +R+C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 31.5 bits (68), Expect = 0.61
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 264 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 383
+CY+C + HI +CP + ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 94 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 198
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 207 QM*RHGAHSARVRTEPDEPSCYNCNKTGHIARNCPEGG 320
Q+ + G +S+R + DE C+ C + GH AR+CP G
Sbjct: 99 QLKKGGGYSSRGKGTEDE--CFKCRRPGHWARDCPSTG 134
Score = 31.5 bits (68), Expect = 0.61
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGG 99
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 163 GHFARDCKEEADRCYRCNGTGHIAREC 243
G ++ K D C++C GH AR+C
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDC 130
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 279 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 443
NK + + P+ G E Q K G S C+ C +PGH +R+C
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 94 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 198
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 207 QM*RHGAHSARVRTEPDEPSCYNCNKTGHIARNCPEGG 320
Q+ + G +S+R + DE C+ C + GH AR+CP G
Sbjct: 99 QLKKGGGYSSRGKGTEDE--CFKCRRPGHWARDCPSTG 134
Score = 31.5 bits (68), Expect = 0.61
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGG 99
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 163 GHFARDCKEEADRCYRCNGTGHIAREC 243
G ++ K D C++C GH AR+C
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDC 130
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 279 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 443
NK + + P+ G E Q K G S C+ C +PGH +R+C
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Frame = +1
Query: 109 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 201
RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.3 bits (75), Expect = 0.087
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSG 120
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 390 GTKTCYVCGKPGHISREC 443
G C+ CGKPGH +REC
Sbjct: 116 GGGDCFKCGKPGHFAREC 133
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 398
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 91 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 243
QGG RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 31 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 135
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 91 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 186
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 103 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 243
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 255 DEPSCYNCNKTGHIARNCPEG 317
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 402 CYVCGKPGHISRECDEAR 455
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 315 GGRESATQT--CYNCNKSGHISRNCPDG 392
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 31 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 135
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 91 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 186
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 103 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 243
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 255 DEPSCYNCNKTGHIARNCPEG 317
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 402 CYVCGKPGHISRECDEAR 455
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 315 GGRESATQT--CYNCNKSGHISRNCPDG 392
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 135
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 33.9 bits (74), Expect = 0.11
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 139 KCFKCNRTGHFARDCK 186
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.5 bits (68), Expect = 0.61
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 315 GGRESATQTCYNCNKSGHISRNC 383
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.81
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 199 RCYRCNGTGHIAREC 243
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 216 RHGAHSARVRTEPDEPSCYNCNKTGHIARNCPEGG 320
R G R + CY C +TGH AR C G
Sbjct: 84 RGGGGGGRGGRGGSDLKCYECGETGHFARECRNRG 118
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYVCGKPGHISREC 443
CY CG+ GH +REC
Sbjct: 101 CYECGETGHFAREC 114
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.012
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 130 QREKCFKCNRTGHFARDC 183
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 201 LLQM*RHGAHSARVR---TEP-DEPSCYNCNKTGHIARNCP 311
+L + H H + +R T P + C+ C +TGH A +CP
Sbjct: 239 MLSLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 7.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 384 PDGTKTCYVCGKPGHISREC 443
P + C+VCG+ GH + +C
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278
Score = 27.9 bits (59), Expect = 7.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 46 CYKCNRTGHFAREC 87
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 46 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 135
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 94 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 186
GG D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 318 GRESATQTCYNCNKSGHISRNC 383
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +3
Query: 216 RHGAHSARVRTEPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 386
R G R R D CY C ++GH AR C G + + ++S R P
Sbjct: 82 RGGGDGGRGRGGSDL-KCYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 199 RCYRCNGTGHIAREC 243
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYVCGKPGHISREC 443
CY CG+ GH +REC
Sbjct: 98 CYECGESGHFAREC 111
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.065
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 136 EKCFKCNRTGHFARDC 183
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.7 bits (71), Expect = 0.26
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGG 99
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.35
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 258 EPSCYNCNKTGHIARNCPEGG 320
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 315 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 452
GGR+S + G G C+ CG+ GH +R+C A
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSA 144
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 196 DRCYRCNGTGHIAREC 243
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +3
Query: 267 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 392
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 273 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 398
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 348 NCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEA 452
+ ++SG + G T +C VCG GH+S +C A
Sbjct: 392 HAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKCPGA 428
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 142 CFKCNRTGHFARDCKEEA 195
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 31.5 bits (68), Expect = 0.61
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 324 ESATQTCYNCNKSGHISRNCP 386
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYVCGKPGHISREC 443
C+ CG+PGH SR+C
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQGGVVS 108
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 380
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 263 VVLQLQQDGPHRTELSRGGAGVCDADLLQLQQVRPHLPQLSRRHQ 397
VV LQ DGPH ++R G AD+L+ Q P L + +H+
Sbjct: 581 VVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 321 RESATQTCYNCNKSGHISRNCPD 389
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 29.1 bits (62), Expect = 3.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 399 TCYVCGKPGHISRECDEAR 455
+C++CGK GH + +C + R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 264 SCYNCNKTGHIARNCPE 314
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 243 RTEPDEPSCYNCNKTGHIARNCPEGGRESATQ 338
+T+ E +CY C + GHIA+ CP RE+ T+
Sbjct: 219 QTKHVELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 339 TCYNCNKSGHISRNCPDGTKTCYV 410
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 249 EPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 362
+ D P C+NC H R CP SA + KS
Sbjct: 237 DDDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.46
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 130 QREKCFKCNRTGHFARDCK 186
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.61
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 309 PEGGRESATQTCYNCNKSGHISRNC 383
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 31.5 bits (68), Expect = 0.61
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 372 SRNCPDGTKTCYVCGKPGHISREC 443
S D K CY C K GH++R+C
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 1.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 43 VCYKCNRTGHFAREC 87
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +1
Query: 142 CFKCNRTGHFARDC--KEEAD 198
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 267 CYNCNKTGHIARNC 308
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 202 CYRCNGTGHIAREC 243
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 31.5 bits (68), Expect = 0.61
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 278 QQDGP-HRTELSRGGAGVCDADLLQLQQVRPHLPQLSRRHQDVLRVRQARPHLARV 442
QQ+ P + +L R A VCD LQL +R HL + + H DVLR +A A++
Sbjct: 633 QQNNPDQQVDLVRD-ASVCDEKTLQLL-LRGHLKKCDQLHLDVLRALKASSDPAKL 686
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/59 (22%), Positives = 26/59 (44%)
Frame = +3
Query: 204 LQM*RHGAHSARVRTEPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 380
L + R R +++ ++ +C+ C + GH +CP E + Y ++ RN
Sbjct: 140 LHVRRRSVSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +3
Query: 264 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK-TCYVCGKPGHISRE 440
S N N + + G + + + +S R+ G K C++CG+ GH +
Sbjct: 114 SVENQNLRKKLMKEKTAAGYKETAEELHVRRRSVSRDRSKSKGEKGACWICGEDGHYKND 173
Query: 441 CDEARN*PQP 470
C +RN +P
Sbjct: 174 C-PSRNSEKP 182
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 263 VVLQLQQDGPHRTELSRGGAGVCDADLLQLQQVRPHLPQLSRRHQ 397
VV Q DGPH ++R G AD+L+ Q P L + +H+
Sbjct: 593 VVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 263 VVLQLQQDGPHRTELSRGGAGVCDADLLQLQQVRPHLPQLSRRHQ 397
VV Q DGPH ++R G AD+L+ Q P L + +H+
Sbjct: 593 VVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.81
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Frame = +3
Query: 141 VLQVQPHRT-LCEGLQGRG*PLLQM*RHGAHSARVRTEPDEPSCYNCNKTGHIARNC--- 308
++ V PH + G+ + P ++ + ++ T P C C T H+ +C
Sbjct: 245 IIGVNPHSLGIGYGINSKVKPRIRATARKSVGRKLATPAKRP-CDICGHTDHLTEDCLYS 303
Query: 309 -PEGGRESATQTCYNCNKSGHISRNCP 386
P CY C GH+S CP
Sbjct: 304 SPTMPYMDNYTKCYCCRGLGHVSMYCP 330
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +1
Query: 133 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 243
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 1 RHEEFSKPIAMSSSVCYKCNRTGHFAREC 87
R +KP + SVCY+C H+A+ C
Sbjct: 263 RGRGINKPRGKAKSVCYRCGMDDHWAKTC 291
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 306 CPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 452
CP G E A + + N+ IS C G C+ CG H C +A
Sbjct: 169 CPASGCEYAVELQEDGNEDNVISVVCLCGHTFCWTCGLESHRPVSCKKA 217
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +3
Query: 342 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 443
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 255 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 386
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +3
Query: 342 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 443
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 255 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 386
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 333 TQTCYNCNKSGHISRNCPD 389
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGG 320
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 43 VCYKCNRTGHFARECTQGG 99
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 333 TQTCYNCNKSGHISRNCPD-GTKTCYVCGKPG 425
T+ C +C+ +GH SR CP G TC G G
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 255 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 398
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 255 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 398
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 184 KEEADRCYRCNGTGHIARECAQSP 255
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 142 CFKCNRTGHFARDC 183
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 46 CYKCNRTGHFARECTQG 96
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 288 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 386
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCG 416
C +C + GH + NCP S N + RN + T +C CG
Sbjct: 767 CIHCQQRGHASTNCP-----SRVPASRNSRPTATNPRN-DESTVSCNTCG 810
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 243 RTEPDEPSCYNCNKTGHIARNCPEGG 320
+T P C+ CN GH ++CP G
Sbjct: 202 KTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 43 VCYKCNRTGHFARECTQGG 99
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Frame = +3
Query: 348 NCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE----ARN*PQPP 473
N S I + CY CG GH+S EC + R P PP
Sbjct: 136 NGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRERPPPP 181
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 243 RTEPDEPSCYNCNKTGHIARNCPE 314
R D+ CY C GH++ CP+
Sbjct: 146 RVYKDKSRCYECGDEGHLSYECPK 169
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 187 EEADRCYRCNGTGHIARECAQS 252
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 1 RHEEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 114
R EF K + S CY+C GH + EC + + R+
Sbjct: 138 RASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 342 CYNCNKSGHISRNCP 386
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 94 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 183
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +1
Query: 61 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 213
R+ + C + G ++ + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 214 NGTGHIARECA 246
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 285 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKT 401
+G +A N E R+ C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRDLI---CFYCGKKGHCLRDCLEVTDT 623
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 360 SGHISRNCPDGTKT--CYVCGKPGHISRECDE 449
SG ++ N + + C+ CGK GH R+C E
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLE 619
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 142 CFKCNRTGHFARDCKEEAD 198
CF C + GH RDC E D
Sbjct: 604 CFYCGKKGHCLRDCLEVTD 622
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +1
Query: 43 VCYKCNRTGHFARECTQ------GGVVSRDSGFNRQREK---CFKCNRTGHFARDC 183
+C+ C + GH R+C + +V S N + E C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +1
Query: 34 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 210
+S Y N T E GG + G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 211 CNGT 222
N T
Sbjct: 504 TNST 507
Score = 28.7 bits (61), Expect = 4.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 336 QTCYNCNKSGHISRNCPD 389
+ CY C + GH+S CP+
Sbjct: 574 RNCYECGEKGHLSSACPN 591
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 336 QTCYNCNKSGHISRNCP 386
+ CY C + GH+S CP
Sbjct: 395 RVCYECGEKGHLSTACP 411
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 336 QTCYNCNKSGHISRNCP 386
+ CY C + GH+S CP
Sbjct: 479 RNCYECGEKGHLSTACP 495
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 327 SATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 443
++T YN S + CY CG+ GH+S C
Sbjct: 456 ASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 396 KTCYVCGKPGHISREC 443
+ CY CG+ GH+S C
Sbjct: 395 RVCYECGEKGHLSTAC 410
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 396 KTCYVCGKPGHISREC 443
+ CY CG+ GH+S C
Sbjct: 574 RNCYECGEKGHLSSAC 589
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 94 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 183
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 342 CYNCNKSGHISRNCPDGTKT 401
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 3.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 267 CYNCNKTGHIARNCP 311
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 31 MSSSVCYKCNRTGHFAREC 87
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 121 FNRQREKCFKCNRTGHFARDCKEEADR 201
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Frame = +3
Query: 261 PSCYNCNKTGHIARNCPEGGRESAT-----------QTCYNCNKSGHISRNC 383
P C++C GHI C RE CY+ GHI RNC
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/76 (30%), Positives = 29/76 (38%)
Frame = +1
Query: 16 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 195
S+P + VC+ C GH C F REK NR + A D +
Sbjct: 618 SEPRRVFRPVCHHCGVVGHIRPRC-----------FRLLREK----NRLMN-AYDVRFHG 661
Query: 196 DRCYRCNGTGHIAREC 243
+CY GHI R C
Sbjct: 662 PKCYHYGVQGHIKRNC 677
>At5g36060.1 68418.m04344 hypothetical protein
Length = 165
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 222 GAHSARVRTEPDEPSCYNCNKTGHIARNCPE 314
GA+ A+ R P C C H NCP+
Sbjct: 134 GAYWAQPRVRESIPRCSRCKSRAHKRSNCPK 164
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +3
Query: 255 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHIS 434
D PSC CN+ G A CP G + C K R+ K C CGKP +S
Sbjct: 194 DVPSCEVCNEAGVKADLCPTEG--CPVRIHKYCLKKLLSQRD----DKRCSGCGKPWPLS 247
Query: 435 R 437
+
Sbjct: 248 K 248
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 273 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 380
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 273 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 380
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 273 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 380
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPE---GGRESAT---QTCYNCNKSGHISRN-----CPDGTKTCYVC 413
C NC H +C E GRE T + C +C +S C G K CY C
Sbjct: 278 CINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVTCRCGYKFCYAC 337
Query: 414 G 416
G
Sbjct: 338 G 338
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 428
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 428
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +3
Query: 267 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 428
C +C++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRNVHSANALSK--RHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGH 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,801,361
Number of Sequences: 28952
Number of extensions: 295700
Number of successful extensions: 1612
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1421
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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