Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20204
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 162 4e-41
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 162 5e-41
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 162 5e-41
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 95 7e-21
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 94 2e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 76 6e-15
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 37 0.003
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 36 0.006
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.008
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.008
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.023
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 32 0.070
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 32 0.093
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.28
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.50
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 27 2.6
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 27 3.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.5
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 4.6
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 4.6
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 8.1
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 8.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 8.1
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 162 bits (394), Expect = 4e-41
Identities = 76/86 (88%), Positives = 80/86 (93%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
RGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGIS
Sbjct: 69 RGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGIS 128
Query: 435 KNGQTREHALLAFTLGVKQLIVGVKK 512
K+GQTREHALLA+TLGVKQLIV V K
Sbjct: 129 KDGQTREHALLAYTLGVKQLIVAVNK 154
Score = 140 bits (338), Expect = 2e-34
Identities = 63/68 (92%), Positives = 66/68 (97%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 83.4 bits (197), Expect = 3e-17
Identities = 35/59 (59%), Positives = 48/59 (81%)
Frame = +2
Query: 509 KMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFK 685
KMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++
Sbjct: 154 KMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQ 210
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 162 bits (393), Expect = 5e-41
Identities = 75/86 (87%), Positives = 80/86 (93%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
RGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGIS
Sbjct: 69 RGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGIS 128
Query: 435 KNGQTREHALLAFTLGVKQLIVGVKK 512
K+GQTREHALLA+TLGVKQLIV V K
Sbjct: 129 KDGQTREHALLAYTLGVKQLIVAVNK 154
Score = 140 bits (338), Expect = 2e-34
Identities = 63/68 (92%), Positives = 66/68 (97%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 83.4 bits (197), Expect = 3e-17
Identities = 35/59 (59%), Positives = 48/59 (81%)
Frame = +2
Query: 509 KMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFK 685
KMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++
Sbjct: 154 KMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQ 210
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 162 bits (393), Expect = 5e-41
Identities = 75/86 (87%), Positives = 80/86 (93%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
RGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGIS
Sbjct: 69 RGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGIS 128
Query: 435 KNGQTREHALLAFTLGVKQLIVGVKK 512
K+GQTREHALLA+TLGVKQLIV V K
Sbjct: 129 KDGQTREHALLAYTLGVKQLIVAVNK 154
Score = 140 bits (338), Expect = 2e-34
Identities = 63/68 (92%), Positives = 66/68 (97%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 83.4 bits (197), Expect = 3e-17
Identities = 35/59 (59%), Positives = 48/59 (81%)
Frame = +2
Query: 509 KMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFK 685
KMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++
Sbjct: 154 KMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQ 210
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 95.5 bits (227), Expect = 7e-21
Identities = 45/86 (52%), Positives = 56/86 (65%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G
Sbjct: 239 RGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFL 298
Query: 435 KNGQTREHALLAFTLGVKQLIVGVKK 512
+NGQTREHA L LG+ +++V V K
Sbjct: 299 ENGQTREHAYLLRALGISEIVVSVNK 324
Score = 72.5 bits (170), Expect = 5e-14
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 243
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 244 AER 252
ER
Sbjct: 235 EER 237
Score = 42.7 bits (96), Expect = 5e-05
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +2
Query: 533 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFK 685
+SE RF+EIK VS + IK +G+ + V FVPIS G N++ + S W+K
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK 383
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/86 (47%), Positives = 59/86 (68%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG
Sbjct: 300 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFE 359
Query: 435 KNGQTREHALLAFTLGVKQLIVGVKK 512
+ GQTREHA+LA T G+ L+V + K
Sbjct: 360 RGGQTREHAVLARTQGINHLVVVINK 385
Score = 79.4 bits (187), Expect = 5e-16
Identities = 34/64 (53%), Positives = 47/64 (73%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 243
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 244 AERD 255
ER+
Sbjct: 296 EERE 299
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 75.8 bits (178), Expect = 6e-15
Identities = 39/86 (45%), Positives = 55/86 (63%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 100 RGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP---- 155
Query: 435 KNGQTREHALLAFTLGVKQLIVGVKK 512
QTREH LLA +GVKQ++V + K
Sbjct: 156 ---QTREHLLLARQVGVKQIVVYINK 178
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 144
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
RGITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
Score = 28.7 bits (61), Expect = 0.87
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCG 147
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 35.9 bits (79), Expect = 0.006
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = +3
Query: 288 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 467
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R + +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVP 199
Query: 468 AFTLGVKQLIVGVKKW 515
+ K +G W
Sbjct: 200 RISFVNKMDRMGADPW 215
Score = 29.1 bits (62), Expect = 0.66
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 303 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 398
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 303 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 398
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.023
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 258 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 32.3 bits (70), Expect = 0.070
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 306 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 485
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 486 KQLIV 500
K +I+
Sbjct: 163 KHIII 167
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 31.9 bits (69), Expect = 0.093
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +3
Query: 255 RGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 303 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 315 IIDAPGHRDFIKNMITGTSQADCAVLIV 398
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 27.1 bits (57), Expect = 2.6
Identities = 27/79 (34%), Positives = 36/79 (45%)
Frame = +3
Query: 396 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVKKWIPLNHHTVSPDLRKSRRKYP 575
VA GT E GI NG E+A+ A +I V + P++H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 576 HTSRRLATTQLLSLSCPFL 632
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 26.6 bits (56), Expect = 3.5
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Frame = -2
Query: 530 VVQWNPFFYSYDELFDTEGESEQGMLTGLTVL-RDTSFEFTGTGSYDEHSAISLRGSCDH 354
V++ P Y+Y LF E VL + T Y H ++LRG
Sbjct: 61 VLKEEPGKYTYMSLFTMPSTEEDYYFNATRVLIHRLKYHPTTKSKYPIH-ILALRG---- 115
Query: 353 VLDEISVSRSINDGNIVLASFELPESNIDCDTTSRS 246
+DE + R DG V+ + S+I DT+S S
Sbjct: 116 -VDEWKIERFRKDGASVIVIDPIASSDIVYDTSSFS 150
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 318 IDAPGHRDFIKNMITGTSQADCAVLIV 398
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 261 ITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 353
+ I+I + E +++ T+ID PG DFI N
Sbjct: 71 VEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 512 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKV 688
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+ +
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWYMI 161
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 534 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 623
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -2
Query: 326 SINDGNIVLASFELPESNIDCDTTSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 147
S++ + L S+ P S T A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 238 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 110
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,650
Number of Sequences: 5004
Number of extensions: 63715
Number of successful extensions: 253
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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