Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20204
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             109   3e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           99   4e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 86   2e-17
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     35   0.057
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_44879| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.40 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.40 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.1  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              29   3.7  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              29   4.9  
SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5)                      29   4.9  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  28   6.5  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  109 bits (261), Expect = 3e-24
 Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
 Frame = +3

Query: 267 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 446
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 447 TREHALLAFTLGVKQLIVGVKK--WIPLNHHTVSP 545
           TREHA+L  +LGV QLIV + K   + L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 42/86 (48%), Positives = 61/86 (70%)
 Frame = +3

Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 434
           +G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  
Sbjct: 206 KGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFE 265

Query: 435 KNGQTREHALLAFTLGVKQLIVGVKK 512
           + GQTREHA+LA T GVK L++ V K
Sbjct: 266 RGGQTREHAMLAKTAGVKHLVILVNK 291



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = +1

Query: 136 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ERD
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 14/32 (43%), Positives = 24/32 (75%)
 Frame = +2

Query: 509 KMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 604
           KMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 291 KMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 52  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/40 (95%), Positives = 39/40 (97%)
 Frame = +3

Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
           RGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 21  RGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = +1

Query: 196 MGKGSFKYAWVLDKLKAERD 255
           MGKGSFKYAWVLDKLKAER+
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
           RGI++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 63  RGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 309 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_44879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 568 FLLDFLKSG-LTVWWFSGIHFFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATM 392
           FL++   S  LT+W++ G+ F+      ++ R K    C  + PF+ +P S S    ++M
Sbjct: 53  FLINLTCSDVLTIWFYVGVQFY-----IMSSRTKGIFFCRYIWPFMSVPLSVSIFTTSSM 107

Query: 391 STAQS 377
           +  +S
Sbjct: 108 AVVRS 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 258 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 404
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 52  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 303 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 7   ELGYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
           E+    + ++R  P   ++ T I + V+G+V+SGKST  G L Y
Sbjct: 92  EMRKVVEVLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTY 134


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 315 IIDAPGHRDFIKNMITGTSQADCAVLIV 398
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
 Frame = +1

Query: 49  KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 222
           K+ +   + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87

Query: 223 WV--LDKLKAERDVVSQSIL-LSGSSKLASTMLPSLMLL 330
               L    +E D++  +++   G + L  T++    ++
Sbjct: 88  LPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGGAQII 126


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 76   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 174
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +3

Query: 318 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 497
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 498 V 500
           +
Sbjct: 123 I 123


>SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5)
          Length = 250

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 151 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDVVSQSI--LLSGSSKLASTMLPSLM 324
           IDK T  K+EK+  E  K   K A++ DK   + D V  +I  L   +  L + +LP+ +
Sbjct: 81  IDKATDAKYEKQNNEADK--TKGAFISDKESVKEDEVPDNIAELQQEAKDLDTIVLPTEV 138

Query: 325 LLDTE 339
             D E
Sbjct: 139 NKDVE 143


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 518  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 658
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 7   ELGYYTQFVIRD*PKMGKEK-THINIVVIGHVDSGKSTTTGHLIY 138
           ELG   ++++R   +M +     + + V+G+VD+GKST  G L +
Sbjct: 209 ELGTVGEYLVR--VRMDENDFMEVRVAVVGNVDAGKSTLLGVLTH 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,661,094
Number of Sequences: 59808
Number of extensions: 484052
Number of successful extensions: 1432
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)