Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20203
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   0.85 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.0  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 587 KPMLKHWPPLVKVNGERRINLQLHPYHS 670
           +P + H P L  ++    +N  +HPYH+
Sbjct: 27  EPHVAHRPGLQGLHHSPHLNHAMHPYHA 54


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 339 TSTLRSSTMLSQELEPTKKPSSRSCARFPTMVSVP 443
           ++T+ +S+     + PT   +S SC   P+M   P
Sbjct: 10  STTMATSSNAMSPMTPTYSMNSMSCVSMPSMNCSP 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,470
Number of Sequences: 336
Number of extensions: 3298
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)