Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20203
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531... 48 6e-06
08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107 47 1e-05
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626... 47 1e-05
02_05_0782 - 31716860-31717150,31717400-31717612,31718497-317186... 44 1e-04
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572... 42 4e-04
01_05_0009 - 17101633-17101836,17101948-17102040,17102122-171023... 42 5e-04
09_03_0079 + 12142390-12142459,12142792-12143006,12143050-121432... 37 0.015
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367... 29 2.9
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 29 2.9
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 29 5.1
04_03_0920 + 20826876-20829293 29 5.1
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461... 28 6.8
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188... 28 9.0
07_03_0476 - 18547223-18548187,18548743-18549958 28 9.0
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773... 28 9.0
04_03_0149 + 11873854-11874135,11874938-11875033 28 9.0
03_05_0721 + 27134277-27134666,27135401-27135466,27137036-271371... 28 9.0
>09_04_0008 +
13651997-13652072,13652440-13652541,13653138-13653142,
13653970-13654188,13654686-13654901,13654989-13655078,
13656307-13656507
Length = 302
Score = 48.4 bits (110), Expect = 6e-06
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Frame = +2
Query: 257 KDLISELKSELTGNLENVIVALMTPLPH---FYAKELHDAVSGIGTDEEAIIEILCTLSN 427
+ L +KSE +GN E ++ ++ + ++AK L ++ G+GTD+ +I ++ T +
Sbjct: 202 RSLEKVVKSETSGNFELALLTILRCAENPAKYFAKVLRKSMKGMGTDDSTLIRVVVTRTE 261
Query: 428 YGIRTISAFYEQLYGKSLESDLKGDTSDTSR 520
++ I A Y + Y KSL + +TS R
Sbjct: 262 IDMQYIKAEYYKKYKKSLAEAIHSETSGNYR 292
Score = 35.5 bits (78), Expect = 0.045
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 347 AKELHDA-VSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTS 508
AK+L+ A +GTDE+ I I S + ++++ Y +Y +SLE +K +TS
Sbjct: 159 AKDLYKAGEKRLGTDEKTFIRIFTERSWAHMASVASAYHHMYDRSLEKVVKSETS 213
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 141 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYART 263
LRK+MKG GTD+ +I V+ R + I + Y ++
Sbjct: 238 LRKSMKGMGTDDSTLIRVVVTRTEIDMQYIKAEYYKKYKKS 278
>08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107
Length = 346
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +2
Query: 275 LKSELTGN----LENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGIRT 442
+KSE +GN L ++ +P +F AK LH+A+ G+GT++ +I ++ T + ++
Sbjct: 251 VKSETSGNFGFGLLTILRCAESPAKYF-AKVLHEAMKGLGTNDTTLIRVVTTRAEVDMQY 309
Query: 443 ISAFYEQLYGKSLESDLKGDTSDTSR 520
I A Y + Y +SL + +TS R
Sbjct: 310 IKAEYHRSYKRSLADAVHSETSGNYR 335
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/84 (23%), Positives = 40/84 (47%)
Frame = +2
Query: 257 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 436
+DL+ L +EL+G+ + ++ + A LH A++G TD A E++C+ + +
Sbjct: 59 QDLLHRLAAELSGHHKRAVLLWVLDPASRDAAVLHQALNGDVTDMRAATEVVCSRTPSQL 118
Query: 437 RTISAFYEQLYGKSLESDLKGDTS 508
+ Y +G L+ D +
Sbjct: 119 LVVRQAYLARFGGGGGGGLEHDVA 142
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 347 AKELHDAVSG-IGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLE 484
A+EL+ A +GTDE I + S + ++A Y +Y +SLE
Sbjct: 177 ARELYRAGERRLGTDERTFIRVFSERSAAHMAAVAAAYHHMYDRSLE 223
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 141 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYART 263
L +AMKG GT++ +I V+ R V I + +Y R+
Sbjct: 281 LHEAMKGLGTNDTTLIRVVTTRAEVDMQYIKAEYHRSYKRS 321
>06_01_0830 +
6261629-6261704,6261829-6261974,6262086-6262310,
6262910-6263122,6264007-6264300
Length = 317
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/84 (29%), Positives = 44/84 (52%)
Frame = +2
Query: 257 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 436
KDL ++ K E L +I P ++ K + A++G+GTDE ++ I+ T + +
Sbjct: 220 KDLKADPKDEFLSTLRAIIRCFCCP-DRYFEKVIRLAIAGMGTDENSLTRIITTRAEVDL 278
Query: 437 RTISAFYEQLYGKSLESDLKGDTS 508
+ I+ Y++ LE + GDTS
Sbjct: 279 KLITEAYQKRNSVPLERAVAGDTS 302
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = +2
Query: 326 TPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDT 505
T L H AK LH+ + ++ II IL T S + Y YG + DLK D
Sbjct: 167 TKLAHSEAKILHEKIQHKAYGDDEIIRILTTRSKAQLIATFNRYNDEYGHPINKDLKADP 226
Query: 506 SD 511
D
Sbjct: 227 KD 228
Score = 35.1 bits (77), Expect = 0.059
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 141 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNY 254
LRKA +G+GT+E II +L R QR I + Y
Sbjct: 20 LRKAFQGWGTNEALIISILAHRDAAQRRAIRRAYADTY 57
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = +2
Query: 353 ELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTSDTSRD 523
+L A G GT+E II IL R I Y YG+ L L+ T + S D
Sbjct: 19 QLRKAFQGWGTNEALIISILAHRDAAQRRAIRRAYADTYGEEL---LRSITDEISGD 72
>02_05_0782 -
31716860-31717150,31717400-31717612,31718497-31718642,
31718742-31718817
Length = 241
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/91 (27%), Positives = 44/91 (48%)
Frame = +2
Query: 251 LCKDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNY 430
+ KDL ++ K E G L +I P ++ K + A+ G+GTDE ++ I+ T +
Sbjct: 143 ITKDLKADPKDEFLGTLRAIIRCFTCP-DRYFEKVIRLALGGMGTDENSLTRIITTRAEV 201
Query: 431 GIRTISAFYEQLYGKSLESDLKGDTSDTSRD 523
++ I Y++ LE + DT+ D
Sbjct: 202 DLKLIKEAYQKRNSVPLERAVAKDTTRDYED 232
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 141 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNY 254
LRKA KG+GT+EK II +L R QR I + Y
Sbjct: 20 LRKAFKGWGTNEKLIISILAHRDAAQRRAIRRAYAEAY 57
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 350 KELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSL 481
++L A G GT+E+ II IL R I Y + YG+ L
Sbjct: 18 EQLRKAFKGWGTNEKLIISILAHRDAAQRRAIRRAYAEAYGEEL 61
>05_04_0139 +
18355597-18355696,18356665-18356778,18357118-18357263,
18357365-18357910,18358397-18358600
Length = 369
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +3
Query: 138 TLRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYART 263
++RKA++G+GTDE A+I++L R QR EIA ++ Y T
Sbjct: 65 SIRKAVQGWGTDENALIEILGHRTAAQRAEIAVAYEGLYDET 106
Score = 41.1 bits (92), Expect = 9e-04
Identities = 20/75 (26%), Positives = 41/75 (54%)
Frame = +2
Query: 284 ELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQ 463
+L L+ + L +P HF A+ + ++ G+GTDEE + + + + + + Y+
Sbjct: 281 QLAAVLKAALWCLTSPEKHF-AEVIRTSILGLGTDEEMLTRGIVSRAEVDMEKVKEEYKV 339
Query: 464 LYGKSLESDLKGDTS 508
Y ++ +D++GDTS
Sbjct: 340 RYNTTVTADVRGDTS 354
Score = 39.1 bits (87), Expect = 0.004
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Frame = +2
Query: 299 LENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKS 478
+ ++ V P P A+ + AV G GTDE A+IEIL + I+ YE LY ++
Sbjct: 47 MASISVPNPAPSPTEDAESIRKAVQGWGTDENALIEILGHRTAAQRAEIAVAYEGLYDET 106
Query: 479 ----LESDLKGDTSDTSRDCACRCAWPIAMKTRASMKAQLKPMLKHWPPLVKV 625
L S+L GD A A ++K + K L+H LV+V
Sbjct: 107 LLDRLHSELSGDFRSALMLWTMDPAARDAKLANEALKKKKKGELRHIWVLVEV 159
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 347 AKELHDAVSGIG--TDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTSD 511
A ELHDAV G G + ++ I+ T S + Y Q +GK ++ L G D
Sbjct: 224 AAELHDAVVGRGQALHGDDVVRIVGTRSKAQLAVTLERYRQEHGKGIDEVLDGRRGD 280
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 141 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNYART*LANSR 281
+R ++ G GTDE+ + + R V ++ E +K Y T A+ R
Sbjct: 304 IRTSILGLGTDEEMLTRGIVSRAEVDMEKVKEEYKVRYNTTVTADVR 350
>01_05_0009 -
17101633-17101836,17101948-17102040,17102122-17102334,
17102514-17102651,17102764-17102909,17106264-17106339
Length = 289
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +3
Query: 141 LRKAMKGFGTDEKAIIDVLCRRGIVQRLEIAETFKTNY 254
L KA +G+GTDE+A+I VL R QR +I T++ NY
Sbjct: 20 LLKAFQGWGTDEQAVIGVLAHRDATQRKQIRLTYEENY 57
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +2
Query: 299 LENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKS 478
+ ++V +TP P A L A G GTDE+A+I +L + I YE+ Y ++
Sbjct: 1 MATIVVPPVTPSPAEDADALLKAFQGWGTDEQAVIGVLAHRDATQRKQIRLTYEENYNEN 60
Query: 479 ----LESDLKGD 502
L+S+L GD
Sbjct: 61 LIQRLQSELSGD 72
Score = 31.5 bits (68), Expect = 0.73
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 257 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSN 427
++LI L+SEL+G+LE + + A ++ A I D I+EI CT S+
Sbjct: 59 ENLIQRLQSELSGDLERAMYHWVLDPVERQAVMVNTATKCIHEDYAVIVEIACTNSS 115
>09_03_0079 +
12142390-12142459,12142792-12143006,12143050-12143268,
12143345-12143932
Length = 363
Score = 37.1 bits (82), Expect = 0.015
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 LISELKSELTGNLENVIVALMTPLPHFYAKEL-HDAVSGIGTDEEAIIEILCTLSNYGIR 439
L+S+ S L+G++ + L P ++ DA+ G D + ++E++CT + +
Sbjct: 81 LVSKHISILSGSIAIRVACLRASEPCVRDADIARDALFGRRIDGDVLVEVVCTRPSGEVA 140
Query: 440 TISAFYEQLYGKSLESDLKGDTS 508
I Y+ Y SLE D+ TS
Sbjct: 141 LIRQAYQARYSASLERDVSSRTS 163
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 347 AKELHDAV--SGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTSDTS 517
AK L++AV S D+ +++++L S +R + A Y +LYG+ L LK DTS
Sbjct: 195 AKTLYEAVEISAARVDQRSVLQLLRHRSGDQLRAVLASYRRLYGQELARALKRKDGDTS 253
>12_01_0471 -
3672309-3672740,3673159-3673251,3673271-3673399,
3673400-3673448,3674291-3674378,3674477-3674573,
3675195-3675278,3675377-3675464,3676589-3676715,
3676774-3676848,3676934-3677042,3677125-3677448,
3677863-3678039
Length = 623
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = +2
Query: 266 ISELKSELTGNLENVIVALMTPLPHFY---AKELHDAVSGIGTDEEAIIEILCTLSNYGI 436
IS+L S+ ++++ + PL H + AKE HD + G+G+ + + + L + G
Sbjct: 159 ISDLNSQDKDPIKSIHFSNSNPLCHAFDPEAKEGHDLIIGMGSGDVYSMSLRQQLQDSGR 218
Query: 437 RTISAFYEQLYGKSLESD 490
+ ++A Q Y K + D
Sbjct: 219 KPVAA---QHYNKGVRYD 233
>09_04_0202 -
15544498-15545037,15546043-15546449,15546874-15546977,
15547580-15547788,15548092-15549428,15551680-15551941
Length = 952
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Frame = +2
Query: 293 GNLENV-IVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQL- 466
GN V +++ P Y+ L V D + I C + YG R + YE
Sbjct: 116 GNRSQVPVISFTATSPSLYSASLPYFVRATLNDSAQVQSIACLIKTYGWREVVPIYEDTD 175
Query: 467 YGKSLESDLKGDTSDTSRDCACRCAWPIAM 556
YG+ + L D R P+++
Sbjct: 176 YGRGIIPYLVDALQDIDARVPYRSVIPLSV 205
>10_08_1005 - 22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 455 YEQLYGKSLESDLKGDTSDTSRDC 526
YE+ YGK LE+ L GD S T+ C
Sbjct: 1131 YERAYGKLLENMLAGDLSLTANIC 1154
>04_03_0920 + 20826876-20829293
Length = 805
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 332 LPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGD 502
LPH A+ + A SG + + CT +YG S ++++LY SD D
Sbjct: 366 LPH-NAENVQAATSGDECSQVCLSNCSCTAYSYGKDGCSIWHDELYNVKQLSDASSD 421
>02_05_1224 +
35045268-35045270,35045735-35045863,35046037-35046180,
35046306-35046451,35046583-35046739,35046838-35046896,
35046978-35047137,35047716-35047865,35047969-35048105,
35048186-35048332,35048428-35048540,35048880-35048971,
35049637-35049738,35050108-35050145,35050255-35050381,
35050462-35050632,35050721-35050852,35050929-35051038,
35051118-35051178,35051386-35051427,35051756-35051933,
35052043-35052248,35052843-35052962,35053138-35053182,
35053310-35053408,35053846-35054058,35054254-35054393,
35054469-35054583,35054684-35054722,35054816-35054899,
35054969-35055139,35055891-35056100,35056193-35056378,
35056473-35056601,35056679-35056749,35056834-35056933,
35057016-35057072,35057778-35057834,35057940-35058020,
35058256-35058338,35058448-35058562
Length = 1572
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 141 LRKAMKGFGTDEKAIIDVLCRRGIVQRLE-IAETFKTNYAR 260
L+ A + F DEKA+ D LC+R IV R E I +T A+
Sbjct: 354 LKTAAELFMCDEKALEDSLCKRIIVTRDENIVKTLDPEAAK 394
>10_01_0167 +
1876793-1877402,1877423-1877642,1877760-1879534,
1880019-1880199,1881313-1881529
Length = 1000
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 356 LHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFY 457
L D +S T EE ++ LC LS+Y ++++ Y
Sbjct: 703 LSDKLSKCKTKEEMLLASLCKLSSYKLQSLHIIY 736
>07_03_0476 - 18547223-18548187,18548743-18549958
Length = 726
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 431 GIRTISAFYEQLYGKSLESDLKGDTSDTSRDCACR 535
G+ TIS + L K ES +K D D S C+CR
Sbjct: 538 GLGTISEYKITLDEKPSESIVKFDALDGSATCSCR 572
>06_03_0095 -
16575938-16576585,16577028-16577219,16577294-16577392,
16577496-16577618,16577717-16577929,16578143-16578251,
16578339-16578427,16578604-16578880,16578974-16579084,
16579160-16580508,16581218-16581631
Length = 1207
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 470 GKSLESDLKGDTSDTSRDCACRCAWPIAMKTRASMKAQLKPMLKH 604
GKSL L+ D D A +CA I ++ KA + ++KH
Sbjct: 817 GKSLTYALEDDVKFKFLDLALKCASVICCRSSPKQKALVTRLVKH 861
>04_03_0149 + 11873854-11874135,11874938-11875033
Length = 125
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = -3
Query: 527 HNLLKCPTCRLLSPIPGSCRTVVRKMRIWYGYHSWKACTGSR*W 396
H L CP PIP + +R+ +G SW+ T W
Sbjct: 80 HGKLSCP-----GPIPNGISLIASNLRVLFGVSSWQQSTEILAW 118
>03_05_0721 +
27134277-27134666,27135401-27135466,27137036-27137191,
27137286-27137453,27137544-27137711
Length = 315
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Frame = -3
Query: 191 VDDSLLIGAEALHSLAKGLGIR-GRVER-----LRGVHRGGALVRV---VLLSAHVEILL 39
VDDSL A+A+H L + LG + GR ++ + +H A+ R+ + L H+ I+
Sbjct: 140 VDDSLAQCAKAVHVLCRALGGKTGRSKKGWDIGVNCIHPTAAMARLFSPIKLPVHMPIIE 199
Query: 38 FNSD 27
F+ D
Sbjct: 200 FHQD 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,062,147
Number of Sequences: 37544
Number of extensions: 386387
Number of successful extensions: 1181
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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