Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20203
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 182 YHRRALPPRHRATPRDRGDL 241
           Y RRA PP+   T +D+G +
Sbjct: 247 YERRATPPQPDRTSKDQGTI 266


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 358 PRCCLRNWNRRRSHHRDPVHAFQLWYPYHI 447
           P CC + W+ ++S  R  +++  L YP  I
Sbjct: 364 PNCCGK-WSSQKSEPRRSIYSSLLRYPRSI 392


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 61  PLMLRFFCLTATHPTTQAR 5
           P +LR+F   AT+P  QA+
Sbjct: 830 PNLLRYFASIATNPKEQAQ 848


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,822
Number of Sequences: 438
Number of extensions: 3427
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)