Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20200
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 159 3e-40
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 153 2e-38
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 145 7e-36
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 132 4e-32
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 99 6e-22
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 60 2e-10
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 44 2e-05
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 31 0.17
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 29 0.51
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.90
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 27 3.6
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 26 4.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.3
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.4
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 8.4
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 8.4
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 159 bits (387), Expect = 3e-40
Identities = 86/146 (58%), Positives = 104/146 (71%), Gaps = 4/146 (2%)
Frame = +3
Query: 90 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*TPTT 269
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA P
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-- 61
Query: 270 QYSMPNVSSDVSSKMLLCKPT*STGLS----RHVSDGGKPKIKVAYKGEDKTFFPEEVSS 437
++ + + K P + + + +S GKP ++V YKGE KTF PEE+SS
Sbjct: 62 HNTIFDAKRLIGRK--FDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISS 119
Query: 438 MVLTKMKETAEAYLGKTVQNAVITFP 515
MVL KM+ETAEAYLG V +AV+T P
Sbjct: 120 MVLMKMRETAEAYLGGKVTDAVVTVP 145
Score = 128 bits (308), Expect = 1e-30
Identities = 68/127 (53%), Positives = 80/127 (62%)
Frame = +2
Query: 254 VNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEACQ*WRQT*DQGSI*G*RQNLFPRGSQ 433
+NP+NTIFDAKRLIGRKF+D VQ+DMKHWPF+ + Q G + P
Sbjct: 59 MNPHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEIS 118
Query: 434 FHGAYENEGNCRSLSWQNCAECSYHVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 613
+ + + VPAYFNDSQRQATKDAG I+GLNVLRIINEPTAAA
Sbjct: 119 SMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAA 178
Query: 614 IAYGLDK 634
IAYGLD+
Sbjct: 179 IAYGLDR 185
Score = 31.1 bits (67), Expect = 0.17
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1
Query: 643 GERNVLIFDLGGGT 684
GE NVLIFDLGGGT
Sbjct: 189 GESNVLIFDLGGGT 202
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 153 bits (372), Expect = 2e-38
Identities = 82/143 (57%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Frame = +3
Query: 90 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*TP-T 266
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA P
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 267 TQYSMPNVSSDVSSKMLLCKPT*STGLSRHVSDGGKPKIKVAYKGEDKTFFPEEVSSMVL 446
T + + + + + + + GKP I+V +KGE KTF PEE+SSMVL
Sbjct: 64 TIFDAKRLIGRRFNDPEV-QSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVL 122
Query: 447 TKMKETAEAYLGKTVQNAVITFP 515
KM+E+AEA+LG V +AV+T P
Sbjct: 123 LKMRESAEAFLGGKVTDAVVTVP 145
Score = 128 bits (309), Expect = 8e-31
Identities = 67/127 (52%), Positives = 81/127 (63%)
Frame = +2
Query: 254 VNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEACQ*WRQT*DQGSI*G*RQNLFPRGSQ 433
+NP+NTIFDAKRLIGR+F D VQ+DMKHWPF+ + + Q G + P
Sbjct: 59 MNPHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEIS 118
Query: 434 FHGAYENEGNCRSLSWQNCAECSYHVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 613
+ + + + VPAYFNDSQRQATKDAG I+GLNVLRIINEPTAAA
Sbjct: 119 SMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAA 178
Query: 614 IAYGLDK 634
IAYGLD+
Sbjct: 179 IAYGLDR 185
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1
Query: 646 ERNVLIFDLGGGT 684
E NVLIFDLGGGT
Sbjct: 190 ETNVLIFDLGGGT 202
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 145 bits (351), Expect = 7e-36
Identities = 74/142 (52%), Positives = 98/142 (69%), Gaps = 1/142 (0%)
Frame = +3
Query: 93 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*TP-TT 269
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ P T
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 270 QYSMPNVSSDVSSKMLLCKPT*STGLSRHVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 449
+ + + + + K S V+D +P ++V G+ K F PEE+S+M+L+
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPF-HIVNDKNRPLVEVNVGGKKKKFTPEEISAMILS 156
Query: 450 KMKETAEAYLGKTVQNAVITFP 515
KMK+TAEAYLGK V +AV+T P
Sbjct: 157 KMKQTAEAYLGKPVTHAVVTVP 178
Score = 116 bits (278), Expect = 5e-27
Identities = 61/133 (45%), Positives = 81/133 (60%)
Frame = +2
Query: 257 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEACQ*WRQT*DQGSI*G*RQNLFPRGSQF 436
NP NTIFD KRLIGRKF++ T+ D+K +PF + + ++ G ++ P
Sbjct: 93 NPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISA 152
Query: 437 HGAYENEGNCRSLSWQNCAECSYHVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAI 616
+ + + + VPAYFND+QRQATKDAGTI+GLNV+RI+NEPTAAAI
Sbjct: 153 MILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAI 212
Query: 617 AYGLDKRVLENEM 655
AYGLDK E +
Sbjct: 213 AYGLDKTDTEKHI 225
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 646 ERNVLIFDLGGGTSTCHLTS 705
E++++++DLGGGT L S
Sbjct: 222 EKHIVVYDLGGGTFDVSLLS 241
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 132 bits (320), Expect = 4e-32
Identities = 74/143 (51%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +3
Query: 90 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*TP-T 266
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ A P
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 267 TQYSMPNVSSDVSSKMLLCKPT*STGLSRHVSDGGKPKIKVAYKGEDKTFFPEEVSSMVL 446
T + + K + + + G P I+V Y GE K F +E+S+MVL
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDI-KHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVL 126
Query: 447 TKMKETAEAYLGKTVQNAVITFP 515
TKMKE +EA L K V+ AVIT P
Sbjct: 127 TKMKEISEAKLNKRVEKAVITVP 149
Score = 111 bits (267), Expect = 1e-25
Identities = 60/128 (46%), Positives = 79/128 (61%)
Frame = +2
Query: 254 VNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEACQ*WRQT*DQGSI*G*RQNLFPRGSQ 433
+NP NT+FDAKRLIGR++ED Q D+KHWPF+ + + G ++ +
Sbjct: 63 MNPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEIS 122
Query: 434 FHGAYENEGNCRSLSWQNCAECSYHVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 613
+ + + + + VPAYF+DSQR ATKDAG I+GLNVLRIINEPTAAA
Sbjct: 123 AMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAA 182
Query: 614 IAYGLDKR 637
IAYGLD +
Sbjct: 183 IAYGLDAK 190
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 634 KGTGERNVLIFDLGGGT 684
K +NVLIFDLGGGT
Sbjct: 190 KSDKPKNVLIFDLGGGT 206
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 99.1 bits (236), Expect = 6e-22
Identities = 57/130 (43%), Positives = 80/130 (61%), Gaps = 2/130 (1%)
Frame = +2
Query: 254 VNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEACQ*WRQT*DQGSI*G*RQNLFPRGSQ 433
+NP NT F KRLIGR+F++ VQ D+K P++ + + + + P SQ
Sbjct: 108 INPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVE---HSNGDAWLEARGKTYSP--SQ 162
Query: 434 FHGAYENEGNCRSLSW--QNCAECSYHVPAYFNDSQRQATKDAGTISGLNVLRIINEPTA 607
G ++ + ++ ++ VPAYFNDSQRQATK AG I+GLNVLR++NEPTA
Sbjct: 163 IGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTA 222
Query: 608 AAIAYGLDKR 637
AA+AYGLDK+
Sbjct: 223 AALAYGLDKK 232
Score = 95.5 bits (227), Expect = 7e-21
Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Frame = +3
Query: 81 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA* 257
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 258 TPTTQYSMPNVSSDVSSKMLLCKPT*STGLSRHVSDGGKPKIKVA-----YKGEDKTFFP 422
P + ++K L+ + + R + + ++ + + KT+ P
Sbjct: 109 NPENTF--------FATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGDAWLEARGKTYSP 160
Query: 423 EEVSSMVLTKMKETAEAYLGKTVQNAVITFP 515
++ +L+KM+ETA YLGK V+NAV+T P
Sbjct: 161 SQIGGFILSKMRETASTYLGKDVKNAVVTVP 191
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 60.5 bits (140), Expect = 2e-10
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 2/148 (1%)
Frame = +3
Query: 78 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKN-QVA 254
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ + +
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 255 *TPTTQYSMPNVSSDVSSKMLLCKPT*STGLSRHVSD-GGKPKIKVAYKGEDKTFFPEEV 431
T S+ ++ + K S +S +++ G KV Y E+ F ++
Sbjct: 63 NFRNTVGSLKRLAGRTYDDPEI-KDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQL 121
Query: 432 SSMVLTKMKETAEAYLGKTVQNAVITFP 515
+ TK+K AEA L +V + VI+ P
Sbjct: 122 IAAYFTKIKAIAEAELIGSVSDVVISIP 149
Score = 50.0 bits (114), Expect = 3e-07
Identities = 21/42 (50%), Positives = 31/42 (73%)
Frame = +2
Query: 509 VPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 634
+PA+F D QR+A +A I+GLN LR++N+ AAA+ YG+ K
Sbjct: 148 IPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITK 189
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 497 CSYHVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKRVL 643
C VP YF D+QR+A + A +GL VL++I++P A +A + VL
Sbjct: 166 CVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPAAVILALMYSEEVL 214
Score = 40.7 bits (91), Expect = 2e-04
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Frame = +3
Query: 93 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV---A*TP 263
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ A
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 264 TTQYSMPNVSSDVSSKMLLCKPT*STGLSRHVSDGGKPKIKVAYKGE--DKTFFPEEVSS 437
T + S + C + + ++ G K ++ + + +K E S
Sbjct: 87 VTNFRDLLGKSHDELTLHHCHYS-ANPVNVEGQIGFKITVQEDEESDPKEKILTAHEASV 145
Query: 438 MVLTKMKETAEAYLGKTVQNAVITFP 515
L ++ E+AE +LG V V++ P
Sbjct: 146 RHLRRLTESAEDFLGTKVNGCVMSVP 171
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 31.1 bits (67), Expect = 0.17
Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Frame = +3
Query: 93 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA*TPTT 269
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA- 83
Query: 270 QYSMPNVSSDVSS---KMLLCKPT*STGLSRHVSDGGKPKIKVAYK-GEDKTFFPEEVSS 437
+S+ NV + + + +L + S+ + + + + +++ +++ + EE+ +
Sbjct: 84 -HSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIA 142
Query: 438 MVLTKMKETAEAYLGKTVQNAVITFP 515
M + AE + + + V+T P
Sbjct: 143 MTMEHYISLAEEMAHEKITDLVLTVP 168
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 29.5 bits (63), Expect = 0.51
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -2
Query: 171 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARLTLVP 1
G W SP S + H ++++ +F +RVL C+ L K +K+A L ++P
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALLAVLP 327
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 85 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 180
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 718 KIPSSM*DDTSKYRRRGQR*VHFVLQYPFVKTVSNRSSSRF 596
K SS D S RR+ ++ Q P ++ V RSSSRF
Sbjct: 1130 KTHSSKSDKKSSRRRKNEKRRKLNEQNPNIRNVPERSSSRF 1170
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = -1
Query: 658 VHFVLQYPFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEVRG 512
VHF+ +K++ +SR++ +N+ + + GL L ++++ G
Sbjct: 272 VHFIESSEVLKSMDPSDNSRYLSFHQNITKDSISRLLNGLPLNLVKILG 320
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 680 PPPRSKISTFRSPVPFCQDRKQS 612
PPPRS ST R P P R S
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVS 386
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -2
Query: 357 HASKGQCFMSACTVASSNLRPMRRLASNIVLLGFTPPGSWRHL 229
+AS+ + ++S V +RP + + +IV+ GS++H+
Sbjct: 1174 NASQAEAYLSKMQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHI 1216
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 668 SKISTFRSPVPFCQDRKQSQQQSVH 594
SK+ F PVP D ++ QQ+ V+
Sbjct: 1343 SKVEAFSIPVPISADLRKYQQEGVN 1367
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 263 WGSRHLVLGGISDETLGVCERNIRRSGPVALVVGD-DLHLPVLEDTNARVR 114
WGS +G + TLG+ + + + L+VGD LHL V ++ +A +R
Sbjct: 418 WGSIGWSVGAMFGATLGIKDSDAPHRRSI-LIVGDGSLHLTV-QEISATIR 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,818
Number of Sequences: 5004
Number of extensions: 70779
Number of successful extensions: 254
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -