Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20198
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   4.7  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   6.2  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    25   6.2  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   8.2  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 480 QTRIPNKLKTTLCFVCRL*KKNDSFPHCCPKLRN 379
           +++  NK+KTT+  V +L   N + P  C +LR+
Sbjct: 447 ESQSSNKIKTTIFPVSQLLFSNANVPAMCQRLRS 480


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 356 LMAYF*Y*FLNFGQQ*GKLSFFFHNLQTKHKVVFNL 463
           LMAY  Y F N     G +S  F  +  KH   FN+
Sbjct: 273 LMAYTSYFFSNGCHMSGVVSLLFCGITLKHYAFFNM 308


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 30  GESSPQDENTAQEGEAEGTPTPK 98
           GES+  DE  A  G A+GT T K
Sbjct: 56  GESTHVDEQQAANGAADGTQTIK 78


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 308 FKSYLQTWTFNLRLVHHLPYVFLVGTVALLCHLI 207
           F ++L  W  + ++   + Y F++G VAL+ HL+
Sbjct: 364 FSTFLSKWLEDRQI---MLYGFMMGIVALIVHLV 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,318
Number of Sequences: 5004
Number of extensions: 33373
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)