Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20198
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247           28   4.8  
11_04_0057 - 12953479-12954364,12954484-12955034,12955125-129553...    27   8.4  

>10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247
          Length = 722

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 262 ITFPMCSLSELWPCSATLFLSSGPLASDAPCKP 164
           I FP   L +++PCS+     + P   D PCKP
Sbjct: 336 IQFP--ELRDVYPCSSDGICKNRPGGYDCPCKP 366


>11_04_0057 -
           12953479-12954364,12954484-12955034,12955125-12955342,
           12957514-12957678,12960562-12960898
          Length = 718

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 245 THREGDAP-VSN*MSMSEGNF*KYLLAILFSFILFYFDLMAY 367
           T R G AP +SN ++    N+  +LLA+L +  L YF + +Y
Sbjct: 652 TGRNGMAPWLSNNLNEGHYNYYYFLLAVLGAIDLIYFIVCSY 693


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,819,359
Number of Sequences: 37544
Number of extensions: 194419
Number of successful extensions: 463
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)