Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20198
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)          28   6.5  
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_15595| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)
          Length = 581

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 329 IRLLTNIFKSYLQTWTFNLRLVHHLPYVFL---VGTVALLCHLI 207
           +R L  + ++YL T  F L ++  LP+ FL   +GT   LC L+
Sbjct: 205 VRDLKKLRQNYLATVKFKLDMISILPFDFLYFGLGTRFTLCRLL 248


>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 3   ARDEVHHQSGESSPQDENTAQEGEAEGTPTPK 98
           A +EV     E SP++E+T +E +A    TPK
Sbjct: 246 APEEVEAPKEEESPKEEDTPKEEDAPKEDTPK 277


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 231 SSDKEHIGKVMHQSQIKCPCLKVT 302
           S  K++IGK+    +  CPCL VT
Sbjct: 459 SHSKDNIGKITCVGESSCPCLIVT 482


>SB_15595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 159 PEGLQGASEANGPLDKNKVAEQGHSSDKEHIGKVM 263
           PEGLQG    N  + +   A QG  SD  +I + +
Sbjct: 112 PEGLQGEHSDNSNIPETLQALQGEHSDNSNIPETL 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,922,389
Number of Sequences: 59808
Number of extensions: 234977
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)