Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20198
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine re...    27   7.5  

>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
            protein F53H1.4a protein.
          Length = 1370

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 9    DEVHHQSGESSPQDENTAQEGEAEG 83
            +E HH SGES  +DE    E E  G
Sbjct: 1195 EEDHHGSGESDDEDEEDIVEEETRG 1219


>AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine
           receptor, class i protein27 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 293 QTWTFNLRLVHHLPYVFLV-GTVALLCHLIFIKWSISL*CSLQAFRFIDPFFPLSCIFLQ 117
           QT+  +  +  HL Y + + GTVA   +   I   I     L +F+F    F +SC+   
Sbjct: 5   QTFNIDFNVPFHLVYHYYISGTVAFFLNTFVIYLIIFHSSRLDSFKFYLLAFQISCLICD 64

Query: 116 I 114
           +
Sbjct: 65  L 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,788,885
Number of Sequences: 27780
Number of extensions: 190590
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)