Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20198
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.2  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.2  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   2.2  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   2.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   2.2  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   2.2  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   2.2  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   2.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.2  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   2.2  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   2.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.2  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   2.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   2.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   6.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   6.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   6.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   6.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   6.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   6.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   6.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   6.8  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EHQRLM  +I
Sbjct: 35  RLQHRREAWLIQQEREREHQRLMKKMI 61


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EH+RLM  +I
Sbjct: 35  RLQHRREVWLIQQEREREHERLMKKMI 61


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EH+RLM  +I
Sbjct: 35  RLQHRREVWLIQQEREREHERLMKKMI 61


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EH+RLM  +I
Sbjct: 35  RLQHRREVWLIQQEREREHERLMKKMI 61


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EH+RLM  +I
Sbjct: 35  RLQHRREVWLIQQEREREHERLMKKMI 61


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EH+RLM  +I
Sbjct: 35  RLQHRREVWLIQQEREREHERLMKKMI 61


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EH+RLM  +I
Sbjct: 35  RLQHRREVWLIQQEREREHERLMKKMI 61


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EH+RLM  +I
Sbjct: 35  RLQHRREVWLIQQEREREHERLMKKMI 61


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 124 KMQERGKKGSINRKACKEHQRLMDHLI 204
           ++Q R +   I ++  +EH+RLM  +I
Sbjct: 35  RLQHRREVWLIQQEREREHERLMKKMI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,820
Number of Sequences: 438
Number of extensions: 2358
Number of successful extensions: 25
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)