Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20195
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          138   4e-33
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                126   2e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             111   5e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     49   4e-06
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    36   0.033
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.044
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              36   0.044
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.18 
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  33   0.23 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.41 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.2  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.2  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  138 bits (334), Expect = 4e-33
 Identities = 60/126 (47%), Positives = 89/126 (70%)
 Frame = +2

Query: 134 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVT 313
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+ G T+++    F+T   + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 314 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 493
           ++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285

Query: 494 IVGVNK 511
           ++ VNK
Sbjct: 286 VILVNK 291



 Score = 36.7 bits (81), Expect = 0.019
 Identities = 13/32 (40%), Positives = 24/32 (75%)
 Frame = +1

Query: 508 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 603
           +MD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 291 KMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  126 bits (303), Expect = 2e-29
 Identities = 57/60 (95%), Positives = 58/60 (96%)
 Frame = +2

Query: 194 MGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 373
           MGKGSFKYAWVLDKLKAERE GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 31.5 bits (68), Expect = 0.71
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 646 NMLEPSTKMPWFKGWQVER 702
           NM+  +++MPWFK W +ER
Sbjct: 53  NMITGTSQMPWFKQWTIER 71


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  111 bits (267), Expect = 5e-25
 Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
 Frame = +2

Query: 266 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 445
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 446 TREHALLAFTLGVKQLIVGVNK--WIPLNHHTVSP 544
           TREHA+L  +LGV QLIV +NK   + L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +2

Query: 50  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 196
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 28/110 (25%), Positives = 51/110 (46%)
 Frame = +2

Query: 83  VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGI 262
           +I H D+GK+T T  L+   G I         +EA  +     K     D ++ ER+ GI
Sbjct: 15  IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65

Query: 263 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
           ++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 66  SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
 Frame = +2

Query: 50  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 223
           M K+    N+ VI HVD GKST T  L+ K G I   K    +F    ++          
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71

Query: 224 VLDKLKAERELGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 400
               L  E        I   K    + + + +ID+PGH DF   +       D A+++V 
Sbjct: 72  TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131

Query: 401 AGTG 412
             +G
Sbjct: 132 CVSG 135


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
 Frame = +2

Query: 65  THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 232
           T I + V+G+V+SGKST  G L Y     G  +  +  F    E Q     S  +  +  
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170

Query: 233 KLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 406
               E         A    E S   +T ID  GH  ++K  I G +    D A+L++A  
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230

Query: 407 TG 412
            G
Sbjct: 231 AG 232


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 35/135 (25%), Positives = 58/135 (42%)
 Frame = +2

Query: 47  KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 226
           K+ +   + NI V+GHVDSGK++    L          +   F+K  Q   +G       
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKAL------STTASTASFDKNPQSQERGI-----T 76

Query: 227 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 406
           LD   +  ++ +   +     E     +T++D PGH   IK +I G      A +I   G
Sbjct: 77  LDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG------AQIIGECG 130

Query: 407 TGEFEAGISKNGQTR 451
           T   E G  ++G+ +
Sbjct: 131 T--IEGGFGQSGKVK 143


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 24/65 (36%), Positives = 30/65 (46%)
 Frame = +2

Query: 74   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 253
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 254  LGITI 268
             GIT+
Sbjct: 1987 RGITV 1991


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
 Frame = +2

Query: 71  INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 223
           + + V+G+VD+GKST     T G L    G   +R    K E E+     +G     +  
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289

Query: 224 VLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 364
               +    + G  +D A    E+SK  +T ID  GH  ++K  I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 308 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 403
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +2

Query: 317 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 496
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 497 VGVNK 511
           +  NK
Sbjct: 123 ILQNK 127


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 314 IIDAPGHRDFIKNMITGTSQADCAVLIV 397
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 634 WHGDNMLEPSTKMPWFKGWQVERKE 708
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +1

Query: 517  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 657
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 690 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 580
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,132,857
Number of Sequences: 59808
Number of extensions: 495236
Number of successful extensions: 1405
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)