Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20194
         (602 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F1F536 Cluster: PREDICTED: hypothetical protein;...    33   3.9  
UniRef50_A3Y1A6 Cluster: Predicted membrane protein; n=2; Vibrio...    33   6.9  

>UniRef50_UPI0000F1F536 Cluster: PREDICTED: hypothetical protein;
           n=6; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 573

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 21/88 (23%), Positives = 40/88 (45%)
 Frame = -3

Query: 516 FYKNLYFITMVIEYGDYLNLCGTFYSSIVSRVILKHKYIKEFI*SF*FQNLYHSIYNR*K 337
           +Y N Y I+ +       N C T++SS  ++    + Y K +  S  + N Y+S YN   
Sbjct: 430 YYNNFYNISSIYNTARNYNYCNTYHSSYYNKTYYNNNYGKYYNNS--YCNNYYSAYNS-- 485

Query: 336 KS**K*LELFNSQFFRCFDYTAKSKYNN 253
                  + +N+ ++  +  T  + YN+
Sbjct: 486 -------KYYNNTYYNYYYSTDNNNYNS 506


>UniRef50_A3Y1A6 Cluster: Predicted membrane protein; n=2;
           Vibrio|Rep: Predicted membrane protein - Vibrio sp.
           MED222
          Length = 390

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = -3

Query: 567 SF*DILSHIDLSKFLIHFYKNLYFITMVIEYGDYLNLCGTFYSSIVSRVILKHK 406
           SF +I+SH D++ F+I +Y  L FI + +  G YL +    Y+   SR++L+ K
Sbjct: 251 SFTEIMSHSDIATFMIGYY--LVFIAIGLAIGAYLKVKVRNYT--FSRLVLEGK 300


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,909,428
Number of Sequences: 1657284
Number of extensions: 8363746
Number of successful extensions: 15721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15716
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)