Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20194
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403...    29   2.8  
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234...    28   6.5  

>01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,
            4034616-4034839,4035168-4035332,4035591-4035881,
            4035971-4036303,4036391-4036485,4036570-4036689,
            4036778-4036934,4037176-4037279,4037383-4037543,
            4037636-4037952,4038655-4038936,4039020-4039321,
            4039453-4039543,4040227-4040280,4040367-4040684,
            4041008-4041092,4041178-4041266,4041474-4041594,
            4042136-4042431
          Length = 1434

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 529  ILNSFL*ELIFYNYGYRIWRLLKFMWHILFKH 434
            ++ S +   IFY+ G   W  +KF+W++ F +
Sbjct: 1268 LVQSLIYGTIFYSLGSFEWTAVKFLWYLFFMY 1299


>04_04_0919 -
           29422003-29422267,29422411-29422660,29423163-29423481,
           29423625-29424794,29424879-29425388,29425449-29425607
          Length = 890

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 588 ICNKYFWSF*DILSHIDLSKFLIHFYKNLYFITMVIE 478
           IC K    F  ILSH+  S  L   Y N+  +T ++E
Sbjct: 435 ICQKLSRCFQTILSHVPKSVILEKNYNNIILLTTMLE 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,040,399
Number of Sequences: 37544
Number of extensions: 189241
Number of successful extensions: 249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)