Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20194
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine rece...    29   3.4  
Z81118-2|CAB03324.2|  318|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 11 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 61  GKTGMNNFDNNVFQCWN 11
           GK+G NN+D  +F  WN
Sbjct: 317 GKSGANNYDQAIFSIWN 333


>Z81118-2|CAB03324.2|  318|Caenorhabditis elegans Hypothetical
           protein T10G3.1 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 477 YGDYLNLCGTFYS 439
           YG+YLNL GTFY+
Sbjct: 303 YGEYLNLFGTFYA 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,758,708
Number of Sequences: 27780
Number of extensions: 210350
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)