Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20194
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    29   0.046
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   3.0  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 0.046
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 410 ISI*KNLYKVFNFKICITQYIIDRKNLNKSD*NFLIHNSFDVSTTQ 273
           + I  N   + N  I  T Y +   NLN+ D N++I NSF + T Q
Sbjct: 1   MEIGNNETNITNSSITET-YFVSAYNLNQEDSNWIITNSFIIFTMQ 45


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 392 LYKVFNFKICITQYIIDRKNL 330
           L+ VF+F I ++ YI+   NL
Sbjct: 65  LFSVFSFLILVSSYIVILVNL 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,345
Number of Sequences: 438
Number of extensions: 2801
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)