Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20193
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 28 1.8
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 27 2.4
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 27 2.4
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 26 5.6
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 26 5.6
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar... 26 7.4
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 25 9.7
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.7
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.7
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|... 25 9.7
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.7
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 27.9 bits (59), Expect = 1.8
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Frame = +3
Query: 120 TSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNFEPIP--VAQKDIENSTKEIHTSF-- 287
+S +D ++ D + +N T V + P+P +Q+ S + T+F
Sbjct: 160 SSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQQQFLVSKNDAFTTFVH 219
Query: 288 --YGRPRTVATIYHGISTTGSVG-SRRKTSQEPPQSSPLAWTTSSGAPRS 428
+ P + T+ S G S + S PP SP+ ++ S G P S
Sbjct: 220 SVHNTPMQQSMYVPQQQTSHSSGASYQNESANPPVQSPMQYSYSQGQPFS 269
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 500 EGGIRPVLTTSSRTREPRNECSRSKGSEMSALDKSI 607
EGG+RP T R + S SK +E S +D I
Sbjct: 313 EGGLRPANTIDGIVRSSLSSSSLSKDTEPSTVDMHI 348
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 27.5 bits (58), Expect = 2.4
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 291 GRPRTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTERPWVT--KVLC 464
G P +G++T +GS T P +SPL T S RSS+ WV K+
Sbjct: 205 GSPTKSIYDQNGLTTPRPIGSDDLTHMYDPYTSPLR-TPSRTLSRSSSHYLWVRHGKLTR 263
Query: 465 SYHISRHP*P 494
S + +H P
Sbjct: 264 SVSLLQHKTP 273
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 430 APRDHGSRKCFVPIIFPDT-LDLFGGRDPSGFNHVVTNAG 546
A + +G+ CF I+ + L L+ G + + + HVV NAG
Sbjct: 138 ASKYNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNAG 177
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 583 DVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHH 753
D R+ QV+ ++ +G + N+ V +G + KNV KL+ +S ++ D+H
Sbjct: 14 DGRLLQVEYGQEAVRRGTTAIALRGNECIV-IGVERKNVPKLQNVSNFQKIAMVDNH 69
>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 618 SYLRIDLSNADIS--LPFDLEHSFLGSRVRDDV 526
S L D+ + D + LPF L+H+F+G V D+
Sbjct: 106 SDLEFDILSIDFTQRLPFYLKHTFMGLAVSRDI 138
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 336 TGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTER 440
TG V S +S PL+ + +SG PR+S R
Sbjct: 470 TGDVKSFDSQESNIIESEPLSASNASGKPRTSVNR 504
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 566 WNIRFWAPAFVTTWLKPDGSLPPN 495
WNI W+ F +P SLP N
Sbjct: 663 WNIGIWSTTFNVITFRPGLSLPNN 686
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 303 TVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTE 437
T +T Y S+T SV ++ S S+P++ T+SS + S++
Sbjct: 249 TESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQ 293
>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +3
Query: 228 PIPVAQKDIENSTKEIHTSFYGRPRTVATIYHG 326
P+PV++KDI T + + + +Y+G
Sbjct: 175 PLPVSKKDIRYYTNPHFAGYLANVKNIRELYYG 207
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 9.7
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +3
Query: 210 RIQNFEPIPVAQKDIENSTKEIHTSFYGRPRTVATIYHG--ISTTGSVGSRRKTSQEPPQ 383
RIQ +PI + + + S E +S + RP+ ++ + + GSV TS
Sbjct: 3 RIQENDPIIKSADESKESPAETLSSIFKRPKIKSSSLNKAYLGKAGSVNGASNTSTNQIS 62
Query: 384 SSPL-AWTTSSGAPRSSTERPWVTKV 458
S + + S AP S+ P T V
Sbjct: 63 SLKVDVSSPPSTAPGSAGSTPKTTPV 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,571,711
Number of Sequences: 5004
Number of extensions: 79127
Number of successful extensions: 271
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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