Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20193
(817 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35) 96 3e-20
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 94 1e-19
SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07) 52 7e-07
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 47 2e-05
SB_54820| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_14141| Best HMM Match : HH_signal (HMM E-Value=0) 44 2e-04
SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092) 42 6e-04
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12) 38 0.010
SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.091
SB_49838| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 33 0.37
SB_7860| Best HMM Match : Gelsolin (HMM E-Value=0.0032) 32 0.64
SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024) 31 0.84
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12) 30 2.0
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 30 2.6
SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015) 30 2.6
SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52) 29 3.4
SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12) 29 4.5
SB_50778| Best HMM Match : PA14 (HMM E-Value=0.00025) 29 4.5
SB_659| Best HMM Match : DUF265 (HMM E-Value=5.2) 29 4.5
SB_30585| Best HMM Match : Myotub-related (HMM E-Value=2.9e-17) 29 6.0
SB_34121| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 29 6.0
SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12) 28 7.9
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 28 7.9
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 28 7.9
>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
Length = 1078
Score = 95.9 bits (228), Expect = 3e-20
Identities = 47/90 (52%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Frame = +2
Query: 245 EGHRKFYKGDSYIILRTTSDS-RNNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGA 421
E + FY GDSYIIL T +S + L +D+H+WIG++STQDE G AA TV LD
Sbjct: 494 EDYGSFYDGDSYIILNTYKESGEDELKYDVHFWIGKDSTQDEYGTAAYKTVELDIHLNDK 553
Query: 422 AVQHRETMGHESALFLSYFQTPLTYLEGGI 511
+QHRE G ES LF SYF++ LT L+GG+
Sbjct: 554 PIQHREVQGFESKLFKSYFKS-LTILKGGV 582
Score = 66.1 bits (154), Expect = 3e-11
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = +2
Query: 245 EGHRKFYKGDSYIILRTTSD-SRNNLSWDIHYWIGRESTQDESGAAAILTVGLD 403
+ + KFY GDSYIIL T D + L +D+H+WIG++STQDE G AA TV LD
Sbjct: 883 DDYGKFYDGDSYIILNTYKDPEEDELKYDVHFWIGKDSTQDEYGTAAYKTVELD 936
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 132 DKNA-RDKAKVHPAFANVGRTAGVQIWRIQNFE 227
+KN R+ A A+ N G G+QIWRI+ F+
Sbjct: 455 EKNVKREAAATEIAWKNAGTREGLQIWRIEKFK 487
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 93.9 bits (223), Expect = 1e-19
Identities = 47/90 (52%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Frame = +2
Query: 245 EGHRKFYKGDSYIILRTTSDSRNN--LSWDIHYWIGRESTQDESGAAAILTVGLDDKFGG 418
E + +FY GDSYIIL T + + L +D+H+WIGR STQDE G AA TV LD
Sbjct: 539 EKYGQFYAGDSYIILWTYEEKEDTEKLCYDLHFWIGRGSTQDEYGTAAYKTVELDTYLND 598
Query: 419 AAVQHRETMGHESALFLSYFQTPLTYLEGG 508
VQHRE M HES +F +YF++ +TYL+GG
Sbjct: 599 VPVQHREIMNHESDMFKTYFKS-ITYLKGG 627
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 117 ITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNFE 227
++ ++ + + A+ A+ N G G+QIWRI F+
Sbjct: 496 LSEVTHEVKKSAAEGEVAWKNAGEKVGLQIWRINKFK 532
>SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)
Length = 546
Score = 51.6 bits (118), Expect = 7e-07
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +2
Query: 260 FYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDESGAAAILTVGLD-DKFGGAAVQ 430
F+ GDSY+++ T R I++W G +S E GAAA LTV LD + FGG AVQ
Sbjct: 181 FFSGDSYLVVYTYRTQRGQKKSIIYFWKGNDSRVFEKGAAAKLTVDLDNNNFGGDAVQ 238
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +1
Query: 490 DLFGGRDPSGFNHVVTNAGA-QKRMFQVKGKR-DVRVRQ-VDPQIASMNKGDCFVLSLDN 660
++ GG+ P N ++ ++ A + R+F KR + V + V+ + D + L +
Sbjct: 306 EILGGKKPYANNILLQSSEAPEPRLFHCYNKRGSLEVEEIVNFGQDDLVDDDVMFVDLGD 365
Query: 661 DIYVFVGEKAKNVE 702
IY++VGE+AK E
Sbjct: 366 HIYMWVGEEAKKSE 379
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 47.2 bits (107), Expect = 2e-05
Identities = 17/54 (31%), Positives = 35/54 (64%)
Frame = +1
Query: 574 GKRDVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFANQV 735
G+R+++ R ++P S N GDC+VL ++++ +VG+ A +E+ K A+++
Sbjct: 1457 GRRNIQTRLIEPCQKSFNSGDCYVLVTKDELFAWVGKHANAIERAKVTEIASRI 1510
Score = 31.5 bits (68), Expect = 0.84
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 335 YWIGRESTQDESGAAAILTVGLDDKFG 415
+W G + T +E GAAA++ V LD++ G
Sbjct: 1838 FWQGNDCTVNEKGAAAVMAVELDEERG 1864
>SB_54820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 46.0 bits (104), Expect = 4e-05
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +1
Query: 601 VDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGK 765
V+ S+NKGD F+L +IY + G + VE++K I A ++RD++ GR +
Sbjct: 48 VELHYKSLNKGDVFILDDGLNIYCWNGSQCSRVERMKGIDVAKRIRDEERGGRAQ 102
>SB_14141| Best HMM Match : HH_signal (HMM E-Value=0)
Length = 754
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 260 FYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDESGAAAILTVGLDDK-FGGAAVQHR 436
FY GDSY+IL D N +H G+ ++ DE AA + +DD+ FGG A Q
Sbjct: 677 FYDGDSYVILDYRKDKTNKKQPVLHILHGKNASTDELFFAATKAIAIDDEYFGGKAKQTV 736
Query: 437 ETMGHESALF 466
+ E F
Sbjct: 737 QVCCREKVQF 746
>SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)
Length = 341
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 326 DIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQT 484
++H+W+G E + +E AA V L K G VQ+RE G+E+ F FQ+
Sbjct: 22 NLHFWVGSECSAEEYCTAAYKAVELFVKLEGKPVQYREAEGYETEEFRKCFQS 74
>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
Length = 446
Score = 37.9 bits (84), Expect = 0.010
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 287 LRTTSDSRNNLSWDIHYWIGRESTQDESG 373
L+T D + L W I+YWIG+E++++E G
Sbjct: 260 LKTELDETDQLFWQIYYWIGKEASREEQG 288
>SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 34.7 bits (76), Expect = 0.091
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +2
Query: 335 YWIGRESTQDESGAAAILTVGLDDKFG-GAAVQHRETMGHESALFLSYFQ-TPLTYLEGG 508
+W G +ST +E GAAA++TV +D + G +H T+ + F Y + + Y +G
Sbjct: 197 FWQGHDSTVNEKGAAALMTVEIDSEKGPQITFKHTVTVRFDIDTFFIYRECSCFFYCDGH 256
Query: 509 IRPVLTTSSRTREPRNECSRSKGS 580
T R + R GS
Sbjct: 257 ALGAGITRKRAAMFSSSVQRQDGS 280
>SB_49838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 33.5 bits (73), Expect = 0.21
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 335 YWIGRESTQDESGAAAILTVGLDDKFG 415
+W G +ST +E GAAA++TV +D + G
Sbjct: 37 FWQGHDSTVNEKGAAALMTVEIDSEKG 63
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 32.7 bits (71), Expect = 0.37
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 216 QNFEPIPVAQKDIENSTKEIHTSFYGRPRTVATIYHGISTTGSVGSR--RKTSQEPPQSS 389
Q PI +T + ++ +P+T + I H ST S TS +P +SS
Sbjct: 44 QTSSPIFHTTSTRPQTTTTVGSTILTQPQTSSAICHTTSTQPHTSSAVGHTTSTKPQKSS 103
Query: 390 PLAWTTSSGAPRSST 434
P+ TTS+ SST
Sbjct: 104 PIGPTTSTQPQTSST 118
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 294 RPRTVATIYHGISTTGSVGSR--RKTSQEPPQSSPLAWTTSSGAPRSSTERP 443
+P+T +T+ H ST S TS +P SSP+ TTS+ SS P
Sbjct: 112 QPQTSSTVGHTTSTQPQTSSTVGHTTSTKPQTSSPIGHTTSTKPQTSSPIGP 163
Score = 30.7 bits (66), Expect = 1.5
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Frame = +3
Query: 84 TATKPQEISGPITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNFEPIPVAQKDIENS 263
T+TKPQ S PI + + + + P + +T+ I + +P + S
Sbjct: 137 TSTKPQT-SSPIGHTTSTKPQTSSPIGPTTSTQHQTSSA-ICHTTSTQPQTSSTVGDTTS 194
Query: 264 TKEIHTSFYG-----RPRTVATIYHGISTTGSVGSR--RKTSQEPPQSSPLAWTTSSGAP 422
TK +S G + +T + I H ST S TS +P SSP+ TTS+
Sbjct: 195 TKPQTSSPIGPTTSTQHQTSSAICHTTSTQPQTSSTVGHTTSTKPQTSSPIGPTTSTQHQ 254
Query: 423 RSSTERP 443
SS P
Sbjct: 255 TSSPIGP 261
>SB_7860| Best HMM Match : Gelsolin (HMM E-Value=0.0032)
Length = 675
Score = 31.9 bits (69), Expect = 0.64
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 132 DKNAR-DKAKVHPAFANVGRTAGVQIWRIQNFE 227
+KN + + A+ PA+ G+ GVQ+WRI F+
Sbjct: 347 EKNVKKESAEGEPAWEGAGKEVGVQVWRIVKFK 379
>SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024)
Length = 693
Score = 31.5 bits (68), Expect = 0.84
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 335 YWIGRESTQDESGAAAILTVGLDDKFG 415
+W G + T +E GAAA++ V LD++ G
Sbjct: 283 FWQGNDCTVNEKGAAAVMAVELDEERG 309
>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
Length = 182
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/40 (47%), Positives = 20/40 (50%)
Frame = -3
Query: 545 PAFVTTWLKPDGSLPPNRSRVSGNMIGTKHFRDPWSLGAG 426
P+ TW K GSLP NRSR G G RD S AG
Sbjct: 122 PSAPVTWSKIGGSLPRNRSRDDGR--GGLVIRDARSSDAG 159
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 29.9 bits (64), Expect = 2.6
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 375 PPQSSPLAWTTSSGAPRSSTERPWVTKVLCSYHISRHP*PIW----REGSVRF-*PRRHE 539
PP + + S AP+ S P VT VLCS + RH P++ +GS + P H
Sbjct: 1610 PPLPTRRPSSCSRPAPQLSYRPPDVTDVLCS-NSPRHHQPLYGRGQHQGSYQHARPFTHM 1668
Query: 540 RGSPETNVPGQREAR 584
S + +PG+ E R
Sbjct: 1669 ASSGDHYIPGRSEER 1683
>SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015)
Length = 1052
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = -3
Query: 602 TCLTRTSRFPLTWNIRFWAPAFVTT-WLKPDGSL-PPNRSRVSG 477
T ++R S L W+ +F+ ++T WLK D S+ PP R+R+SG
Sbjct: 477 TLVSRQSYAGLLWSKQFYY--YITEDWLKGDPSMPPPPRARLSG 518
>SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 265 QRRFIHHFTDDLGQSQQSIMGYPLLDRSGVDARRVRSRRNPHRW-PGRQVRGRRGPAPRD 441
QRR+IH T G+S+ PL R+ V++R R + + G R RG R
Sbjct: 803 QRRYIHMTTSTTGKSRNRRPYIPLATRTAVESRNQRRYIHMTTFTTGTGPRLPRGGIERQ 862
Query: 442 HGSRK 456
+ RK
Sbjct: 863 YNHRK 867
>SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52)
Length = 460
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 551 WAPAFVTTWLKPDGSLPPNRSRVSGNMIGTKHFRDPWSLGAGPRRPRTCRP 399
WA V KP+G PP+R + G HFR + + P R RP
Sbjct: 345 WAVQAVPKSTKPEGYRPPSR-KFEGESTMQSHFRGQYGPRSKPVRQEMNRP 394
>SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)
Length = 924
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/65 (21%), Positives = 35/65 (53%)
Frame = +1
Query: 487 LDLFGGRDPSGFNHVVTNAGAQKRMFQVKGKRDVRVRQVDPQIASMNKGDCFVLSLDNDI 666
L +GGR + + ++ A K + ++ R + + ++ ++ ++KGD +L+ ND+
Sbjct: 315 LSAYGGRKYRCWENALSLANKAKPLIGLETCRILELIKIGRNVSEISKGDAEILNEFNDV 374
Query: 667 YVFVG 681
+ +G
Sbjct: 375 FEGLG 379
>SB_50778| Best HMM Match : PA14 (HMM E-Value=0.00025)
Length = 1266
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 485 PLTYLEGGIRPVLTTSSRTREPRNECSRSKGSEMSALDKS 604
P T GIRP+L +S+ PR + R+ G+ S D S
Sbjct: 315 PTTMQNAGIRPMLASSAGIALPRKQQKRNTGAPDSCGDAS 354
>SB_659| Best HMM Match : DUF265 (HMM E-Value=5.2)
Length = 229
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 288 YGRPRTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAW 401
YG T+ +Y T G GS K + + SPLAW
Sbjct: 106 YGGRYTLDVVYEVTKTLGLRGSSTKKKKRIKKKSPLAW 143
>SB_30585| Best HMM Match : Myotub-related (HMM E-Value=2.9e-17)
Length = 488
Score = 28.7 bits (61), Expect = 6.0
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +1
Query: 550 QKRMFQVKGKRDVRVRQVDPQIASMNKGDCFVLSLD--NDIYVFVGEKAKNVEKLKAISF 723
+KR + VKG DVR R P S+ D V+ L+ ND+ ++ ++ V+ + +S
Sbjct: 88 RKRRYHVKGSNDVRKRSGSPS-GSITTDDESVVDLNDINDLQLY--DEPNAVQGVDRLSS 144
Query: 724 ANQVRDQDHHGRGKSILWTSTRAMW 798
+D G G +IL S W
Sbjct: 145 MPCCQDYSRLGFG-NILRASAGGPW 168
>SB_34121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 216 QNFEPIPVAQKDIENSTKEIHTSF-YGRPRTVATIYHGIST 335
+N P+P QK+ E+ KEI +S G R +T+Y+ S+
Sbjct: 8 ENILPVPDPQKEDESLHKEIFSSLKVGPRRDASTVYYPCSS 48
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 228 PIPVAQKDIENSTKEIHTSFYGRPRTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTT 407
P + Q +S+ H +G P+T +I IS+ G T PQ++P + T+
Sbjct: 237 PTNMTQSSTSHSSTPRH---HGEPQTTISITSIISSAIPRGHLPTTPSTTPQATPPSTTS 293
Query: 408 SSGAPRSS 431
+ AP +S
Sbjct: 294 QTTAPTAS 301
>SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1413
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 70 PSGHGRRPSLRR*AGRSHRCQIKTPVTKPKSIRLLPMSAEQPVCKYGEYRTSNQYPL 240
P+G ++PS +G+ + Q +TP++ KSI +P ++++P + S Q+PL
Sbjct: 1317 PNGQLKQPSSIINSGQLQQLQYRTPISANKSI--IPQTSQEPTSS----QQSCQHPL 1367
>SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12)
Length = 567
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 545 PAFVTTWLKPDGSLPPNRSRVSGNMIGTKH 456
P V TW + +GSLP RS+V + + H
Sbjct: 308 PHPVVTWQRRNGSLPQRRSKVEMSGLSVSH 337
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -3
Query: 530 TWLKPDGSLPPNRSRVSGNMIGTKHFRDPWSLGAGPRR 417
TW++ DG++P S + ++G + F++ + + RR
Sbjct: 137 TWVEMDGNIPSGESFIRQFVVGQQFFKEEFGMMCKERR 174
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 28.3 bits (60), Expect = 7.9
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +3
Query: 408 SSGAPRSSTERPWVTKVLCSYHISRHP*PIWREGSVRF*PRRH-----ERGSPETNVPGQ 572
++G+ R+S P T V SR RE + R PRRH ERG+ T P
Sbjct: 369 NTGSSRTSLT-PSTTSVPAPVRPSRTTSTRARERADRELPRRHSHGPNERGANRTGPPQS 427
Query: 573 REARCPR*TSRSADS 617
R+A TS +ADS
Sbjct: 428 RQAVPRHRTSATADS 442
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,753,922
Number of Sequences: 59808
Number of extensions: 640841
Number of successful extensions: 2191
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2182
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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