Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20193
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   4.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.5  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   5.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 411 NLSSRPTVRIAAAPDSSCVDSRP 343
           N S  P  RIA+AP SS   S P
Sbjct: 508 NSSPSPNPRIASAPSSSTSSSPP 530


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 92  GRRPCP-DGSQENKKETRKNDLH 27
           G R C  D S+E KK+ R + LH
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLH 271


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 398 LDDKFGGAAVQHRETMGHESALFLSYFQ 481
           +D    GA + +   M   SA+F+S+FQ
Sbjct: 560 VDSSTSGATIVNYSIMIFLSAVFISFFQ 587


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 218 LYSPYLHTGCSADIGKSRMDFGFVTGV 138
           L+  ++H G    +G S +  GF  G+
Sbjct: 87  LFKGFVHLGAGLAVGFSGLAAGFAIGI 113


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 185 QNSRCANMENTE 220
           +NSRCAN +N +
Sbjct: 410 RNSRCANFDNQD 421


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 13/50 (26%), Positives = 18/50 (36%)
 Frame = +3

Query: 222 FEPIPVAQKDIENSTKEIHTSFYGRPRTVATIYHGISTTGSVGSRRKTSQ 371
           F P     KDI     E++       R    IY  I T   + +R +  Q
Sbjct: 286 FRPSGTVLKDINRQVDELNFDIQDLERWRDRIYEAIHTGSVINTRGERIQ 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,704
Number of Sequences: 438
Number of extensions: 5194
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)