Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20188
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    27   0.12 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    27   0.12 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   3.3  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   4.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   5.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.8  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   7.7  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
 Frame = -3

Query: 164 LPQLCGGPADKCPHFQFKVHQSAGTEVGRR---TFDRQGLSIRPVDRCA 27
           +P  C G A  CP     V +    E+ RR   TFD        VD C+
Sbjct: 337 MPHKCNGNAHNCPSRSHPVWEIVMNELDRRDDPTFDESLPGCHMVDSCS 385


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
 Frame = -3

Query: 164 LPQLCGGPADKCPHFQFKVHQSAGTEVGRR---TFDRQGLSIRPVDRCA 27
           +P  C G A  CP     V +    E+ RR   TFD        VD C+
Sbjct: 344 MPHKCNGNAHNCPSRSHPVWEIVMNELDRRDDPTFDESLPGCHMVDSCS 392


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 630 LVPSRTVPTCSQTSPPPPH 574
           L PS   P  S TSP PP+
Sbjct: 58  LSPSGNTPNKSSTSPYPPN 76


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 445 GLFSLNVHFQFDVEIEFIVVSQVGE 371
           G +  + H +F VE+   +V ++GE
Sbjct: 598 GYWLFHCHIEFHVEVGMALVFKIGE 622


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory
          receptor candidate 5 protein.
          Length = 522

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 58 VCP*GLWIGVPEITIEP 8
          +C  G W+G+  +++EP
Sbjct: 9  ICKFGGWMGLTPVSVEP 25


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 479 DSSNGKRWSPPGTFQFECP 423
           D +  K  S    FQFECP
Sbjct: 155 DEAKKKGCSSEEVFQFECP 173


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 565 PEPSKSPGLRLQPVT 521
           P PS+SP    QPVT
Sbjct: 340 PTPSQSPNQIYQPVT 354


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 11  FYSDLWHTYPQALWTDLACRRCG 79
           FYS L + YP     +   R+CG
Sbjct: 249 FYSHLSNPYPSEEAKEELARKCG 271


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,963
Number of Sequences: 336
Number of extensions: 4981
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)