Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20188
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541... 103 2e-22
01_06_0637 + 30763657-30763858,30765600-30766261 34 0.13
10_08_0577 + 18894171-18894917 31 1.2
07_01_0595 - 4432642-4432926,4433062-4433769,4433964-4434164,443... 30 1.6
05_01_0291 - 2274587-2274676,2274871-2275076,2275638-2275719,227... 30 1.6
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 30 1.6
10_08_0622 - 19337470-19339008 30 2.2
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 30 2.2
03_05_0173 + 21502765-21504216 30 2.2
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190... 29 2.9
12_02_0491 + 19648754-19650021,19650135-19650248,19650871-196514... 29 3.8
09_06_0182 - 21397221-21397575,21397712-21398076,21398510-213986... 29 3.8
11_02_0096 - 8261667-8262083 29 5.0
09_04_0539 - 18416184-18416830,18417983-18419057 29 5.0
06_03_1146 - 28004896-28005554,28005664-28005844 29 5.0
05_03_0066 + 7980038-7981468 29 5.0
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 28 6.6
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150... 28 6.6
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367... 28 6.6
10_02_0062 - 4814139-4814176,4814571-4815627 28 8.7
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496 28 8.7
04_04_0895 - 29168107-29168229,29168617-29170068 28 8.7
03_02_0459 + 8649448-8651994 28 8.7
01_01_0426 + 3234987-3235935,3236744-3236782,3237044-3237409,324... 28 8.7
>02_01_0724 -
5415218-5415280,5415398-5415523,5415614-5415710,
5415797-5415861,5415964-5416026,5416127-5416197,
5416430-5416489,5416564-5416663,5416863-5416938,
5417284-5417358,5417451-5417575,5417664-5417722,
5418031-5418109,5418303-5418533
Length = 429
Score = 103 bits (246), Expect = 2e-22
Identities = 58/163 (35%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Frame = +2
Query: 254 LPLGPFTAKNLGSTISPWIVTLEALRPFIVDNFPQDPTPFPYLRHDDKFNFDIKLEVDIQ 433
+PLGPF K+ +T+SPWIVT++AL+PF + Q+P P PYL + N+DI LEV I+
Sbjct: 258 IPLGPFLGKSFSTTVSPWIVTMDALKPFTCEAPKQEPEPLPYLAEKNHVNYDIPLEVWIK 317
Query: 434 TEKSPVVTTVCRSNYRYMYWTVKQQW-RTDCHGLQPQTGRLARLGHHQWGGGGLVWEHVG 610
++ + V +SN++++YWT+ QQ +G + G + G G E +G
Sbjct: 318 PKEQSEPSMVAKSNFKHLYWTLTQQLAHHTVNGCNLRPGDMFATGTL----SGPETESLG 373
Query: 611 TVLEGT--KPVRLSTGEE-RKFIQDGDTSRCAATAQRDGLRIG 730
+LE T +S G RKF++DGD A + +G +G
Sbjct: 374 CLLELTWNGQKEISVGNSTRKFLEDGDEVILTACCKGEGYNVG 416
Score = 94.7 bits (225), Expect = 7e-20
Identities = 42/80 (52%), Positives = 57/80 (71%)
Frame = +3
Query: 12 SIVISGTPIHRPYGQTLPVEGAAPHFGPCRLMDFELEVGAFVGGPPTQLGERVCAKDAED 191
S+++SGT I RP GQ P + P+FGP + +DFELE+ A VG P +LG+ + DAE+
Sbjct: 178 SVIVSGTDIIRPKGQGHPTGDSRPYFGPSKKLDFELEMAAIVG-PGNELGKPIDINDAEE 236
Query: 192 KIFGFVLLNDWSARDIQKWE 251
IFG +++NDWSARDIQ WE
Sbjct: 237 HIFGLMIMNDWSARDIQAWE 256
>01_06_0637 + 30763657-30763858,30765600-30766261
Length = 287
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 637 NGLGAFQDSSNMLPNESAASPLMVPEPSKSPGLRLQP 527
+G +D N LP+ + SP ++P P ++P RL P
Sbjct: 17 HGSALLEDGPNPLPSHLSPSPSLLPSPKRTPTCRLSP 53
>10_08_0577 + 18894171-18894917
Length = 248
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -3
Query: 596 KRVRRLPTDGARAEQVSRSEVAARDSLCAIAVSPSNTCTDSSNGKRWSP-PGTFQFE-CP 423
++VRR + AR EQ+ R V RDS +A N S++ P P T+ E CP
Sbjct: 24 EKVRRDEAEAAREEQLQREAVRRRDSDLRLAALRRNRGLQSADAAPLPPRPPTYAAEQCP 83
>07_01_0595 -
4432642-4432926,4433062-4433769,4433964-4434164,
4434296-4435288
Length = 728
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 564 GTISGEAADSFGSMLELSWKAPSPFAFRLVRRENSYRTETRHVARP 701
GT+ S MLE+ W SP A + RR NS++ + +A P
Sbjct: 619 GTVRDVHCRSEWRMLEVDWDRDSPLAPTMNRRVNSWQVQPVQLALP 664
>05_01_0291 -
2274587-2274676,2274871-2275076,2275638-2275719,
2275948-2276064,2276489-2276751,2277548-2277620,
2278324-2278427,2278613-2278706
Length = 342
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Frame = +2
Query: 422 VDIQTEKSPV-----VTTVCRSNYRYMYWTVKQQWRTDCHGLQPQTGRLARLGHHQWGGG 586
V +Q K P+ T C+ + W +++ W + ARL HH+ G
Sbjct: 177 VKVQLLKPPIGEGGSYTAYCKDIRPALDWCLEKGWTVPLSQANGRCWHAARLIHHKSGTA 236
Query: 587 GLVWEHVG-TVLEGTKPVRLSTGEERK 664
L+W G T + G+ S +E +
Sbjct: 237 DLLWIQYGYTEMSGSDEESTSDDDEEE 263
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = -1
Query: 616 DSSNMLPNESAASPLMVPEPSKSPGLR-----LQ----PVTVCAPLLFHRPIHVPIVRTA 464
++S++LP +AA+P P P+ +P L LQ PV V A + + H P++
Sbjct: 96 ETSSLLPTAAAAAPAPPPPPAPAPSLHHHLHALQPQPAPVEVDAAAIDPKHSHGPVLHGN 155
Query: 463 NGGHHRGLFSLNVHFQ 416
G+ G L+ Q
Sbjct: 156 GNGNGNGGLELDAALQ 171
>10_08_0622 - 19337470-19339008
Length = 512
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 316 LRGTASVHRRQLPSGPDSVPL 378
LR AS RR+LP GP +VPL
Sbjct: 19 LRNAASSRRRRLPPGPPAVPL 39
>03_05_0642 -
26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 144 PPTQLGERVCAKDAEDKIFGFVLL---NDWSARDIQK 245
PPT + RV DAED + LL NDW A IQK
Sbjct: 517 PPTAMANRVLFTDAEDGLLALGLLEYNNDWGA--IQK 551
>03_05_0173 + 21502765-21504216
Length = 483
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 657 SSPVERRTGLVPSRTVPTCSQTSPPPP 577
SSP ++R G+ PS T P +SPPPP
Sbjct: 63 SSPPQQRVGVFPSPT-PQIVGSSPPPP 88
>11_03_0184 +
11317787-11318198,11318337-11318671,11318756-11319048,
11319125-11319483,11319549-11319748,11319823-11320012,
11320084-11320188,11320262-11320338,11320428-11320649
Length = 730
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 223 QSFKSTKPKILSSASLAQTLSPSCVGGPPTNAPTSSSK 110
++F PKI S+ + PS PTN TSSSK
Sbjct: 333 KTFSRPAPKIRKSSRKPSDIDPSGKDSNPTNVDTSSSK 370
>12_02_0491 +
19648754-19650021,19650135-19650248,19650871-19651427,
19651446-19651529,19651566-19651783,19652004-19652309
Length = 848
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 558 GSGTISGEAADSFGSMLELSWKAPS 632
G G +SG A + GSM + SW+AP+
Sbjct: 788 GRGLMSGVTAPARGSMKQASWEAPT 812
>09_06_0182 -
21397221-21397575,21397712-21398076,21398510-21398685,
21398802-21399039,21399627-21400118
Length = 541
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 554 QVSRSEVAARDSLCAIAVSPSNTCTDSSNGKRWSPPGTFQFECPLPV 414
Q S ++AA CA A S+ CT KRW P + + P+PV
Sbjct: 229 QKSAVDIAAE---CADANGASHPCTIVLRTKRWIVPDLYAWGVPVPV 272
>11_02_0096 - 8261667-8262083
Length = 138
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = -3
Query: 650 QSKGERAWCLPGQFQHAPKRVRRLPTDGARAEQVSRSEVAARDSLCAIAVSPSNTCTDSS 471
Q+ E AW G+ P R P + + +R ++ L P C D S
Sbjct: 3 QAHIEMAWWSRGRHPRGPGGRRPRPVESGASSGATRRRESSDTGLGPRRGRPPGGCVDGS 62
Query: 470 NGKRWSP 450
G+R SP
Sbjct: 63 LGQRRSP 69
>09_04_0539 - 18416184-18416830,18417983-18419057
Length = 573
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 217 TTGVHVTSRSGSTTSRAVHGQEPRQHHLAVDSDLRGTASVHRRQLPSGPDS 369
T G H +R+ + T V EP +V+S+LR +A+ H RQ +G S
Sbjct: 213 TRGAH-GARAATPTPSIV---EPENSRSSVESNLRSSAAAHARQSSAGISS 259
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 717 PSR*AVAAQRDVSPSCMNFLSSPVERRTGLVPSRTVPTCSQTSPPPPH*WCPSRASLP 544
PS AA ++PS + SP + + P+ T + +SPP P PS ++ P
Sbjct: 165 PSPAPAAATPSLAPSPVATTPSPSPSVSPMAPAPAPTTSTPSSPPAPAAMAPSPSTTP 222
>05_03_0066 + 7980038-7981468
Length = 476
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3
Query: 392 RRVSSRGTESGPEGSCRR*TDAVPLRSLSTARWCCRGSWP*TAREVVLPLLDVTCT 225
+ ++SR TE E R TDA S S+ + WP E LL ++C+
Sbjct: 413 KELTSRETEESKEELTSRKTDANDAESASSVAEAIKKKWPSEMLEAAETLLMLSCS 468
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 235 SRALQSFKSTKPKILSSASLAQTLSPSCVGGPPTNAP-TSSSKSISLQGPKWGAAPSTGK 59
SRA + K + + +S+S A AP TSS + S P W AP G
Sbjct: 67 SRATMTLKRRRRPVRASSSPAPADPMPTPAASSALAPATSSPRPASPPTPPWTTAPPPGI 126
Query: 58 VCP*GLWI 35
P LWI
Sbjct: 127 AAP-PLWI 133
>03_05_0990 -
29503950-29504462,29504567-29504686,29514956-29515012,
29515635-29515689,29515765-29515845,29515928-29515983,
29516112-29516256,29516347-29516415,29517355-29517467,
29517619-29517708,29518112-29518176,29519256-29519667
Length = 591
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 351 KLSTMNGRSASKVTIHGEMVLPRFLAVNGPRGSTPTSGCHVHSS 220
++ MN S+S GE+ P ++ + + P S CHV +S
Sbjct: 498 EMRAMNSVSSSSKDCFGELCGPETISTDSCSSTQPMSTCHVKTS 541
>03_02_0983 -
12933082-12934884,12935669-12936487,12936754-12936795,
12937116-12937244
Length = 930
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = -3
Query: 629 WCLPGQFQHAPKRVRRLPTDGARAEQVSRSEVAARDSLCAIAVSPSNTCTDSSN 468
W LP +F + +++ + +A + SR + S+C + + S C+ S +
Sbjct: 125 WTLPSEFNKKEEEIQKQHSSETKAIENSRDGDSQTTSICPTSNNTSGQCSTSQD 178
>10_02_0062 - 4814139-4814176,4814571-4815627
Length = 364
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 696 AQRDVSPSCMNFLSSPVERRTGLVPSRT-VPTCSQTSPP 583
A + S C++FLSS + R G + T + C QT PP
Sbjct: 189 AGEEYSTICLSFLSSVSKARNGPCENATGLGCCQQTLPP 227
>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
Length = 389
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Frame = -1
Query: 223 QSFKSTKPKILSSASLAQTLSPSCVGGP-------PTNAPTSSSKSISLQGPKWGAAPST 65
Q FKS P+ S A T + +C GGP P ++P+ S KS + P T
Sbjct: 228 QVFKSACPRSYSYAFDDPTSTFTCSGGPDYTLTFCPASSPSGSQKSTTATPTPAAMMPGT 287
Query: 64 G 62
G
Sbjct: 288 G 288
>04_04_0895 - 29168107-29168229,29168617-29170068
Length = 524
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -1
Query: 184 ASLAQTLSPSCVGGPPTNAPTSSSKSISLQGPKWGAAPST---GKVCP 50
AS A + S SC PP A +SSS +S G GAA T GK P
Sbjct: 41 ASAASSSSSSC---PPDAASSSSSVRLSTNGTSAGAAAVTVAAGKKAP 85
>03_02_0459 + 8649448-8651994
Length = 848
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 484 HVLDGETAMAHRLSR-AATSDRETCSARAPSVGRRRTRLGACWNCPGRH 627
H++ G HRL R A +S R C + P+ R R G C GRH
Sbjct: 277 HMVIGRALSEHRLFRDALSSFRRACELQ-PTDVRPHFRAGNCLYALGRH 324
>01_01_0426 +
3234987-3235935,3236744-3236782,3237044-3237409,
3240871-3242315
Length = 932
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +1
Query: 526 RAATSDRETCSARAPSVGRRR 588
RAATS RE APSV RRR
Sbjct: 367 RAATSSRERRRCPAPSVARRR 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,329,397
Number of Sequences: 37544
Number of extensions: 675873
Number of successful extensions: 2835
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2829
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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