Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20188
(730 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069144-1|AAL39289.1| 417|Drosophila melanogaster GH16063p pro... 126 4e-29
AE014296-753|AAF47833.2| 417|Drosophila melanogaster CG14993-PA... 126 4e-29
AY119658-1|AAM50312.1| 1006|Drosophila melanogaster SD04414p pro... 32 0.70
AF211192-1|AAF32278.1| 983|Drosophila melanogaster SULF1 protein. 32 0.70
AE014297-2184|AAF55296.1| 1114|Drosophila melanogaster CG6725-PA... 32 0.70
AY071146-1|AAL48768.1| 528|Drosophila melanogaster RE18076p pro... 31 2.1
AE014296-332|AAF47548.2| 528|Drosophila melanogaster CG12011-PA... 31 2.1
M95811-1|AAD19752.1| 1788|Drosophila melanogaster laminin B1 cha... 30 3.7
M19525-1|AAA28663.1| 1788|Drosophila melanogaster protein ( D.me... 30 3.7
AE014134-1348|AAN10647.1| 1788|Drosophila melanogaster CG7123-PB... 30 3.7
AE014134-1347|AAF52563.1| 1788|Drosophila melanogaster CG7123-PA... 30 3.7
AY060771-1|AAL28319.1| 293|Drosophila melanogaster GH23390p pro... 29 4.9
AF454351-1|AAL91725.1| 1258|Drosophila melanogaster unconvention... 29 4.9
AF454350-1|AAL91724.1| 1278|Drosophila melanogaster unconvention... 29 4.9
AE014297-3474|AAS65205.1| 1278|Drosophila melanogaster CG5501-PD... 29 4.9
AE014297-3473|AAS65204.1| 1258|Drosophila melanogaster CG5501-PB... 29 4.9
AE014297-3082|AAF55945.2| 293|Drosophila melanogaster CG6028-PA... 29 4.9
AE014298-688|AAF45991.2| 400|Drosophila melanogaster CG32770-PA... 29 6.5
AE014297-2568|AAF55584.1| 950|Drosophila melanogaster CG7709-PA... 29 6.5
AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containi... 29 8.6
AE014298-1753|AAF48147.2| 1860|Drosophila melanogaster CG2750-PA... 29 8.6
AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA... 29 8.6
AE014134-2890|ABI31323.1| 4106|Drosophila melanogaster CG15148-P... 29 8.6
AE014134-2889|ABI31324.1| 4061|Drosophila melanogaster CG15148-P... 29 8.6
AE014134-2888|AAF53638.2| 4019|Drosophila melanogaster CG15148-P... 29 8.6
>AY069144-1|AAL39289.1| 417|Drosophila melanogaster GH16063p
protein.
Length = 417
Score = 126 bits (303), Expect = 4e-29
Identities = 72/165 (43%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Frame = +2
Query: 254 LPLGPFTAKNLGSTISPWIVTLEALRPFIVDNFPQDPTPFPYLRHDDKFNFDIKLEVDIQ 433
+PLGPFTAKNLG+TISPW+V AL+PF++DNFPQ+P PYLR + FNFDI LEV ++
Sbjct: 243 VPLGPFTAKNLGTTISPWVVPTAALKPFVLDNFPQEPEVLPYLRQNIPFNFDINLEVSLK 302
Query: 434 TEKSPVVTTVCRSNYRYMYWTVKQQWRTDCHGLQPQTGRLARLGHHQWGG--GGLVWEHV 607
+ +SN++++YWT QQ H TG R G G G +
Sbjct: 303 PADQN-EALISKSNFKHLYWTPLQQ---IAH--HTVTGCNLRPGDLMASGTISGETPDSY 356
Query: 608 GTVLE----GTKPVRLSTGEERKFIQDGDTSRCAATAQRDGLRIG 730
G++LE GTK + L G+ RKF+QD D +++GLRIG
Sbjct: 357 GSLLELCWKGTKTLELPGGKTRKFLQDFDEVIIRGHCEKNGLRIG 401
Score = 111 bits (267), Expect = 9e-25
Identities = 48/81 (59%), Positives = 58/81 (71%)
Frame = +3
Query: 12 SIVISGTPIHRPYGQTLPVEGAAPHFGPCRLMDFELEVGAFVGGPPTQLGERVCAKDAED 191
S+V+SGTPI RP GQT P P FG C+L+DFELE+ F+GG QLGE + +A
Sbjct: 162 SVVVSGTPIRRPLGQTFPDGAEKPVFGACKLLDFELEMAFFIGGKGNQLGEPIRVDEAWK 221
Query: 192 KIFGFVLLNDWSARDIQKWEY 254
+FGF L+NDWSARDIQKWEY
Sbjct: 222 NVFGFTLMNDWSARDIQKWEY 242
>AE014296-753|AAF47833.2| 417|Drosophila melanogaster CG14993-PA
protein.
Length = 417
Score = 126 bits (303), Expect = 4e-29
Identities = 72/165 (43%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Frame = +2
Query: 254 LPLGPFTAKNLGSTISPWIVTLEALRPFIVDNFPQDPTPFPYLRHDDKFNFDIKLEVDIQ 433
+PLGPFTAKNLG+TISPW+V AL+PF++DNFPQ+P PYLR + FNFDI LEV ++
Sbjct: 243 VPLGPFTAKNLGTTISPWVVPTAALKPFVLDNFPQEPEVLPYLRQNIPFNFDINLEVSLK 302
Query: 434 TEKSPVVTTVCRSNYRYMYWTVKQQWRTDCHGLQPQTGRLARLGHHQWGG--GGLVWEHV 607
+ +SN++++YWT QQ H TG R G G G +
Sbjct: 303 PADQN-EALISKSNFKHLYWTPLQQ---IAH--HTVTGCNLRPGDLMASGTISGETPDSY 356
Query: 608 GTVLE----GTKPVRLSTGEERKFIQDGDTSRCAATAQRDGLRIG 730
G++LE GTK + L G+ RKF+QD D +++GLRIG
Sbjct: 357 GSLLELCWKGTKTLELPGGKTRKFLQDFDEVIIRGHCEKNGLRIG 401
Score = 111 bits (267), Expect = 9e-25
Identities = 48/81 (59%), Positives = 58/81 (71%)
Frame = +3
Query: 12 SIVISGTPIHRPYGQTLPVEGAAPHFGPCRLMDFELEVGAFVGGPPTQLGERVCAKDAED 191
S+V+SGTPI RP GQT P P FG C+L+DFELE+ F+GG QLGE + +A
Sbjct: 162 SVVVSGTPIRRPLGQTFPDGAEKPVFGACKLLDFELEMAFFIGGKGNQLGEPIRVDEAWK 221
Query: 192 KIFGFVLLNDWSARDIQKWEY 254
+FGF L+NDWSARDIQKWEY
Sbjct: 222 NVFGFTLMNDWSARDIQKWEY 242
>AY119658-1|AAM50312.1| 1006|Drosophila melanogaster SD04414p
protein.
Length = 1006
Score = 32.3 bits (70), Expect = 0.70
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = -1
Query: 478 IVRTANGGHHRGLFSL----NVHFQFDVEIEFIVVSQVGERSRVLREVV 344
IV T++ G+H G F L + F+FDV + F++ + S+V+ E+V
Sbjct: 214 IVYTSDHGYHLGQFGLIKGKSFPFEFDVRVPFLIRGPGIQASKVVNEIV 262
>AF211192-1|AAF32278.1| 983|Drosophila melanogaster SULF1 protein.
Length = 983
Score = 32.3 bits (70), Expect = 0.70
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = -1
Query: 478 IVRTANGGHHRGLFSL----NVHFQFDVEIEFIVVSQVGERSRVLREVV 344
IV T++ G+H G F L + F+FDV + F++ + S+V+ E+V
Sbjct: 218 IVYTSDHGYHLGQFGLIKGKSFPFEFDVRVPFLIRGPGIQASKVVNEIV 266
>AE014297-2184|AAF55296.1| 1114|Drosophila melanogaster CG6725-PA
protein.
Length = 1114
Score = 32.3 bits (70), Expect = 0.70
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = -1
Query: 478 IVRTANGGHHRGLFSL----NVHFQFDVEIEFIVVSQVGERSRVLREVV 344
IV T++ G+H G F L + F+FDV + F++ + S+V+ E+V
Sbjct: 322 IVYTSDHGYHLGQFGLIKGKSFPFEFDVRVPFLIRGPGIQASKVVNEIV 370
>AY071146-1|AAL48768.1| 528|Drosophila melanogaster RE18076p
protein.
Length = 528
Score = 30.7 bits (66), Expect = 2.1
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Frame = -1
Query: 643 KANGLGAFQDSSNMLPNESAASPLMVPEPSKSPGLRLQPVTVC-APLLFHRPIHV--PIV 473
+A+G G D++ +LP AA PL+VP P + G ++ L+ +HV PI
Sbjct: 386 QASGDGKKVDANVLLPINLAALPLLVPAPELTQGKASPSGSISFQDLIKATNVHVSQPIK 445
Query: 472 RTANGGHHRGLFSLNVHFQFDVEIEFIVVSQVGERSRVLRE--VVDDERTQ 326
AN G L + I+ +++S + E+ ++ ++ V D +R+Q
Sbjct: 446 LQANNG-------LTQVQKEQAAIQQLILSHLSEQQKLFQKQSVADGKRSQ 489
>AE014296-332|AAF47548.2| 528|Drosophila melanogaster CG12011-PA
protein.
Length = 528
Score = 30.7 bits (66), Expect = 2.1
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Frame = -1
Query: 643 KANGLGAFQDSSNMLPNESAASPLMVPEPSKSPGLRLQPVTVC-APLLFHRPIHV--PIV 473
+A+G G D++ +LP AA PL+VP P + G ++ L+ +HV PI
Sbjct: 386 QASGDGKKVDANVLLPINLAALPLLVPAPELTQGKASPSGSISFQDLIKATNVHVSQPIK 445
Query: 472 RTANGGHHRGLFSLNVHFQFDVEIEFIVVSQVGERSRVLRE--VVDDERTQ 326
AN G L + I+ +++S + E+ ++ ++ V D +R+Q
Sbjct: 446 LQANNG-------LTQVQKEQAAIQQLILSHLSEQQKLFQKQSVADGKRSQ 489
>M95811-1|AAD19752.1| 1788|Drosophila melanogaster laminin B1 chain
protein.
Length = 1788
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Frame = +1
Query: 112 LNWKWGHLSAGPPHNWGRGSAPRTPKTKFL-------VSCF*TTGVHVTSRSGSTTSRAV 270
L+W+W + + P GR P+ P KF+ SC+ TG + R T+ +
Sbjct: 17 LSWQWDPVDSQRPPQHGRRDRPKYPPNKFIKTHPCERSSCYPATGNLLIGRENRLTASST 76
Query: 271 HG 276
G
Sbjct: 77 CG 78
>M19525-1|AAA28663.1| 1788|Drosophila melanogaster protein (
D.melanogaster lamininB1 subunit mRNA, complete cds. ).
Length = 1788
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Frame = +1
Query: 112 LNWKWGHLSAGPPHNWGRGSAPRTPKTKFL-------VSCF*TTGVHVTSRSGSTTSRAV 270
L+W+W + + P GR P+ P KF+ SC+ TG + R T+ +
Sbjct: 17 LSWQWDPVDSQRPPQHGRRDRPKYPPNKFIKTHPCERSSCYPATGNLLIGRENRLTASST 76
Query: 271 HG 276
G
Sbjct: 77 CG 78
>AE014134-1348|AAN10647.1| 1788|Drosophila melanogaster CG7123-PB,
isoform B protein.
Length = 1788
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Frame = +1
Query: 112 LNWKWGHLSAGPPHNWGRGSAPRTPKTKFL-------VSCF*TTGVHVTSRSGSTTSRAV 270
L+W+W + + P GR P+ P KF+ SC+ TG + R T+ +
Sbjct: 15 LSWQWDPVDSQRPPQHGRRDRPKYPPNKFIKTHPCERSSCYPATGNLLIGRENRLTASST 74
Query: 271 HG 276
G
Sbjct: 75 CG 76
>AE014134-1347|AAF52563.1| 1788|Drosophila melanogaster CG7123-PA,
isoform A protein.
Length = 1788
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Frame = +1
Query: 112 LNWKWGHLSAGPPHNWGRGSAPRTPKTKFL-------VSCF*TTGVHVTSRSGSTTSRAV 270
L+W+W + + P GR P+ P KF+ SC+ TG + R T+ +
Sbjct: 15 LSWQWDPVDSQRPPQHGRRDRPKYPPNKFIKTHPCERSSCYPATGNLLIGRENRLTASST 74
Query: 271 HG 276
G
Sbjct: 75 CG 76
>AY060771-1|AAL28319.1| 293|Drosophila melanogaster GH23390p
protein.
Length = 293
Score = 29.5 bits (63), Expect = 4.9
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 63 PVEGAAPHFGPCRLMDFELEVGAFVGGPPTQLGERVCAKDAEDKIFGFVLLNDWSARDIQ 242
P + H ++ D+E+E+ +G ++ +V A D +FG+ + D SARD Q
Sbjct: 120 PQDNVIAHAASSKI-DWEVELVCVIG----KVARQVPKSQAMDYVFGYSVAQDISARDWQ 174
Query: 243 K 245
K
Sbjct: 175 K 175
>AF454351-1|AAL91725.1| 1258|Drosophila melanogaster unconventional
myosin 95E isoformII protein.
Length = 1258
Score = 29.5 bits (63), Expect = 4.9
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = -1
Query: 610 SNMLPNESAASPLMVPEPSKSPGLRLQPVTVCAPLLFHRPIHVPIVRTANGGHHRGLFSL 431
S++ P SA+S L KSP R++ CA + + ++ N + LF +
Sbjct: 369 SSVSPTPSASSSLH--RRHKSPTQRMRECVTCADVFLEAMGNACTLKNNNSSRYGKLFDI 426
Query: 430 NVHFQFDVEIEFIVVSQVGERS 365
+ F+ D I +GER+
Sbjct: 427 EIDFKGDPMGTRITDPIIGERN 448
>AF454350-1|AAL91724.1| 1278|Drosophila melanogaster unconventional
myosin 95E isoformI protein.
Length = 1278
Score = 29.5 bits (63), Expect = 4.9
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = -1
Query: 610 SNMLPNESAASPLMVPEPSKSPGLRLQPVTVCAPLLFHRPIHVPIVRTANGGHHRGLFSL 431
S++ P SA+S L KSP R++ CA + + ++ N + LF +
Sbjct: 369 SSVSPTPSASSSLH--RRHKSPTQRMRECVTCADVFLEAMGNACTLKNNNSSRYGKLFDI 426
Query: 430 NVHFQFDVEIEFIVVSQVGERS 365
+ F+ D I +GER+
Sbjct: 427 EIDFKGDPMGTRITDPIIGERN 448
>AE014297-3474|AAS65205.1| 1278|Drosophila melanogaster CG5501-PD,
isoform D protein.
Length = 1278
Score = 29.5 bits (63), Expect = 4.9
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = -1
Query: 610 SNMLPNESAASPLMVPEPSKSPGLRLQPVTVCAPLLFHRPIHVPIVRTANGGHHRGLFSL 431
S++ P SA+S L KSP R++ CA + + ++ N + LF +
Sbjct: 369 SSVSPTPSASSSLH--RRHKSPTQRMRECVTCADVFLEAMGNACTLKNNNSSRYGKLFDI 426
Query: 430 NVHFQFDVEIEFIVVSQVGERS 365
+ F+ D I +GER+
Sbjct: 427 EIDFKGDPMGTRITDPIIGERN 448
>AE014297-3473|AAS65204.1| 1258|Drosophila melanogaster CG5501-PB,
isoform B protein.
Length = 1258
Score = 29.5 bits (63), Expect = 4.9
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = -1
Query: 610 SNMLPNESAASPLMVPEPSKSPGLRLQPVTVCAPLLFHRPIHVPIVRTANGGHHRGLFSL 431
S++ P SA+S L KSP R++ CA + + ++ N + LF +
Sbjct: 369 SSVSPTPSASSSLH--RRHKSPTQRMRECVTCADVFLEAMGNACTLKNNNSSRYGKLFDI 426
Query: 430 NVHFQFDVEIEFIVVSQVGERS 365
+ F+ D I +GER+
Sbjct: 427 EIDFKGDPMGTRITDPIIGERN 448
>AE014297-3082|AAF55945.2| 293|Drosophila melanogaster CG6028-PA,
isoform A protein.
Length = 293
Score = 29.5 bits (63), Expect = 4.9
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 63 PVEGAAPHFGPCRLMDFELEVGAFVGGPPTQLGERVCAKDAEDKIFGFVLLNDWSARDIQ 242
P + H ++ D+E+E+ +G ++ +V A D +FG+ + D SARD Q
Sbjct: 120 PQDNVIAHAASSKI-DWEVELVCVIG----KVARQVPKSQAMDYVFGYSVAQDISARDWQ 174
Query: 243 K 245
K
Sbjct: 175 K 175
>AE014298-688|AAF45991.2| 400|Drosophila melanogaster CG32770-PA
protein.
Length = 400
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 546 GDLLGSGTISGEAADSFGSMLELSWKAPSP 635
G L+G G++SG A + GSM++++ + +P
Sbjct: 261 GGLIGGGSVSGGAGGAGGSMMDVAHEEDTP 290
>AE014297-2568|AAF55584.1| 950|Drosophila melanogaster CG7709-PA
protein.
Length = 950
Score = 29.1 bits (62), Expect = 6.5
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1
Query: 187 SASLAQTLSPSCVGGPPTNAPTSS----SKSISLQGPKWGAAPSTGKVCP 50
S+S + S S GGP +AP+SS S S+S GP + +APS+ P
Sbjct: 747 SSSYSAPSSSSSSGGPYPSAPSSSYSAPSSSLSSGGP-YPSAPSSSYAAP 795
>AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containing
ubiquitin-conjugatingenzyme protein.
Length = 4876
Score = 28.7 bits (61), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 154 CVGGPPTNAPTSSSKSISLQGPKWGAAPST 65
CVGGP +++ +S + S PK A P T
Sbjct: 2264 CVGGPSSSSGNTSKSAASSSSPKNQAVPGT 2293
>AE014298-1753|AAF48147.2| 1860|Drosophila melanogaster CG2750-PA
protein.
Length = 1860
Score = 28.7 bits (61), Expect = 8.6
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -3
Query: 593 RVRRLPTDGARAEQVSRSEVAARDSLCAIAVSPSNTCTDSSNGKRWSPPGTFQFECPLPV 414
R+RR+ R+ Q+ RS+ A I+ +PS CT +++G PG LP
Sbjct: 163 RLRRIRERMNRSNQLRRSDDCAMQQHTTISNAPSMDCTQANDG---GEPGR-HLNFSLPG 218
Query: 413 *CRN 402
C N
Sbjct: 219 RCEN 222
>AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA
protein.
Length = 4876
Score = 28.7 bits (61), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 154 CVGGPPTNAPTSSSKSISLQGPKWGAAPST 65
CVGGP +++ +S + S PK A P T
Sbjct: 2264 CVGGPSSSSGNTSKSAASSSSPKNQAVPGT 2293
>AE014134-2890|ABI31323.1| 4106|Drosophila melanogaster CG15148-PB,
isoform B protein.
Length = 4106
Score = 28.7 bits (61), Expect = 8.6
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 298 LAVDSDLRGTASVHRRQL--PSGPDSVPLL----ETRR*IQFRHQTGSGHSN*KVPGGDH 459
LA D+ + +A++ R L P G +PLL +T H GSG G+
Sbjct: 3143 LARDAQIIESAALLREMLSLPYGACPIPLLLDPTQTAAAWLMAHLKGSGRPCELTTHGND 3202
Query: 460 RLPFELSVHVLDGETAM 510
RLP++L + V G+T +
Sbjct: 3203 RLPYQLELAVRFGKTLL 3219
>AE014134-2889|ABI31324.1| 4061|Drosophila melanogaster CG15148-PC,
isoform C protein.
Length = 4061
Score = 28.7 bits (61), Expect = 8.6
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 298 LAVDSDLRGTASVHRRQL--PSGPDSVPLL----ETRR*IQFRHQTGSGHSN*KVPGGDH 459
LA D+ + +A++ R L P G +PLL +T H GSG G+
Sbjct: 3098 LARDAQIIESAALLREMLSLPYGACPIPLLLDPTQTAAAWLMAHLKGSGRPCELTTHGND 3157
Query: 460 RLPFELSVHVLDGETAM 510
RLP++L + V G+T +
Sbjct: 3158 RLPYQLELAVRFGKTLL 3174
>AE014134-2888|AAF53638.2| 4019|Drosophila melanogaster CG15148-PA,
isoform A protein.
Length = 4019
Score = 28.7 bits (61), Expect = 8.6
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 298 LAVDSDLRGTASVHRRQL--PSGPDSVPLL----ETRR*IQFRHQTGSGHSN*KVPGGDH 459
LA D+ + +A++ R L P G +PLL +T H GSG G+
Sbjct: 3056 LARDAQIIESAALLREMLSLPYGACPIPLLLDPTQTAAAWLMAHLKGSGRPCELTTHGND 3115
Query: 460 RLPFELSVHVLDGETAM 510
RLP++L + V G+T +
Sbjct: 3116 RLPYQLELAVRFGKTLL 3132
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,850,646
Number of Sequences: 53049
Number of extensions: 1081125
Number of successful extensions: 4333
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4325
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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