Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20188
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    28   0.078
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.0  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 0.078
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 316 LRGTASVHRRQLPSGPDSVPLLETRR*IQFRHQTGSGHSN*KVPGGDHR 462
           L+  A  H+  +  GPDS PL+E+    Q  HQ  + H + +   G H+
Sbjct: 143 LQAAAVDHQGSVLDGPDSPPLVES----QMHHQMHTQHPHMQPQQGQHQ 187


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 227 TPVVQKHETKNFVFGVLGADPLPQLCGG 144
           TP++QKH   +   GV     +P + GG
Sbjct: 316 TPLIQKHLKIHDTCGVHNLHGMPGILGG 343


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 452 PPGTFQFECPLPV*CRN*IYRRVSSRGTE 366
           PPGT  +EC     C      RV  RGT+
Sbjct: 466 PPGTPIYECNKRCNCDIDCINRVVQRGTK 494


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 127 PTSSSKSISLQGPKWG 80
           P+SS+KS  L+GP+ G
Sbjct: 199 PSSSTKSYVLEGPRNG 214


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 202 PKILSSASLAQTLSPSCVGGPPTNAPTSSSKSIS 101
           P +LS   +         GGPPT A T  ++ ++
Sbjct: 379 PAVLSRIGIILASPLKREGGPPTGATTGPNEIVT 412


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +1

Query: 250 STTSRAVHG---QEPRQHHLAVDS 312
           ST +R +HG   Q P+QH L V +
Sbjct: 185 STGTRLLHGILSQHPQQHGLGVQN 208


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 274 GQEPRQHHLAVDSDLRGTASVHRRQLPSGPDSVP 375
           GQ   +  L +D D  G  S  RR+   G    P
Sbjct: 294 GQSEAEKRLKLDEDADGAVSPLRREKDRGSREYP 327


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 254 VLPLLDVTCTPVVQKHET 201
           +LP++ V C PV Q +++
Sbjct: 787 ILPMIPVYCVPVPQVNDS 804


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 542 TGRLARLGHHQWGGGGLVWEHVGTVLEGTKPVR 640
           TG  + +G   W   GLV +     +EGT  V+
Sbjct: 367 TGAFSWIGSDGWSARGLVSDGNEAEVEGTLSVQ 399


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -2

Query: 639  RTGLVPSRTVPTCSQTSPPPP 577
            R  +  +R +P      PPPP
Sbjct: 1842 RRSVGSARNIPVSGSPEPPPP 1862


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 130 HLSAGPPHNWGRGSAPRTPKT 192
           H   G  HN     +PR+P++
Sbjct: 308 HRGRGSVHNGSNNGSPRSPES 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,882
Number of Sequences: 438
Number of extensions: 6313
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)