Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20188
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar t... 103 2e-22
At2g27040.1 68415.m03249 PAZ domain-containing protein / piwi do... 32 0.45
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 31 0.78
At4g39580.1 68417.m05596 kelch repeat-containing F-box family pr... 31 1.0
At5g28520.1 68418.m03472 jacalin lectin family protein similar t... 30 1.4
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.8
At5g57130.1 68418.m07135 expressed protein 29 2.4
At4g31430.2 68417.m04465 expressed protein 29 2.4
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 29 2.4
At1g63550.1 68414.m07184 hypothetical protein low similarity to ... 29 3.2
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 29 3.2
At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family... 29 4.2
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 29 4.2
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 29 4.2
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 4.2
At4g14400.3 68417.m02222 ankyrin repeat family protein contains ... 28 5.5
At4g14400.2 68417.m02221 ankyrin repeat family protein contains ... 28 5.5
At4g14400.1 68417.m02220 ankyrin repeat family protein contains ... 28 5.5
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 28 5.5
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 28 7.3
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 28 7.3
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r... 28 7.3
At3g25170.1 68416.m03143 rapid alkalinization factor (RALF) fami... 28 7.3
At5g13260.1 68418.m01523 expressed protein 27 9.6
At5g04170.1 68418.m00405 calcium-binding EF hand family protein ... 27 9.6
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated... 27 9.6
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 27 9.6
At3g55760.2 68416.m06196 expressed protein 27 9.6
At3g55760.1 68416.m06195 expressed protein 27 9.6
At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containi... 27 9.6
At2g43880.1 68415.m05455 polygalacturonase, putative / pectinase... 27 9.6
At2g15300.1 68415.m01745 leucine-rich repeat transmembrane prote... 27 9.6
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ... 27 9.6
At1g54060.1 68414.m06160 expressed protein similar to 6b-interac... 27 9.6
>At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar to
fumarylacetoacetase (Fumarylacetoacetate hydrolase,
Beta-diketonase, FAA)[Rattus norvegicus]
SWISS-PROT:P25093
Length = 421
Score = 103 bits (246), Expect = 2e-22
Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Frame = +2
Query: 254 LPLGPFTAKNLGSTISPWIVTLEALRPFIVDNFPQDPTPFPYLRHDDKFNFDIKLEVDIQ 433
+PLGPF K+ G+TISPWIVTL+AL PF QDP P PYL + N+DI LEV ++
Sbjct: 250 VPLGPFLGKSFGTTISPWIVTLDALEPFGCQAPKQDPPPLPYLAEKESVNYDISLEVQLK 309
Query: 434 TEKSPVVTTVCRSNYRYMYWTVKQQW-RTDCHGLQPQTGRLARLGHHQWGGGGLVWEHVG 610
+ +SN++ +YWT+ QQ +G + G L G G + G
Sbjct: 310 PSGRDDSCVITKSNFQNLYWTITQQLAHHTVNGCNLRPGDLLGTGTI----SGPEPDSYG 365
Query: 611 TVLE----GTKPVRLSTGEERKFIQDGDTSRCAATAQRDGLRIG 730
+LE G KP+ L+ G + F++DGD + + DG +G
Sbjct: 366 CLLELTWNGQKPLSLN-GTTQTFLEDGDQVTFSGVCKGDGYNVG 408
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/81 (56%), Positives = 57/81 (70%)
Frame = +3
Query: 12 SIVISGTPIHRPYGQTLPVEGAAPHFGPCRLMDFELEVGAFVGGPPTQLGERVCAKDAED 191
SIVISGT I RP GQ P + P+FGP + +DFELE+ A VG P +LG+ + +A D
Sbjct: 170 SIVISGTDIIRPRGQGHPQGNSEPYFGPSKKLDFELEMAAVVG-PGNELGKPIDVNNAAD 228
Query: 192 KIFGFVLLNDWSARDIQKWEY 254
IFG +L+NDWSARDIQ WEY
Sbjct: 229 HIFGLLLMNDWSARDIQAWEY 249
>At2g27040.1 68415.m03249 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|Q9QZ81
Eukaryotic translation initiation factor 2C 2 {Rattus
norvegicus}; contains Pfam profiles PF02171: Piwi
domain, PF02170: PAZ domain
Length = 924
Score = 31.9 bits (69), Expect = 0.45
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -1
Query: 637 NGLGAFQDSSNMLPNESAASPLMVPEPSKSPGLRLQPVTVCAPLLFHR-PIHVPIVRTAN 461
NG GA +S+N L P P P + +PV V L + P+ VP+ R
Sbjct: 5 NGNGADLESANGANGSGVTEALPPPPPVIPPNV--EPVRVKTELAEKKGPVRVPMARKGF 62
Query: 460 GGHHRGLFSLNVHFQFDV 407
G + + L HF+ DV
Sbjct: 63 GTRGQKIPLLTNHFKVDV 80
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = -1
Query: 211 STKPKILSSASLAQTLSPSCVGGPPTNAPTSSSKSISLQGPKWGAAPS 68
S PK S S + T+SPS G T++ S S S S GP G PS
Sbjct: 262 SMAPKSSSPVSNSPTVSPSLAPGGSTSSSPSDSPSGSAMGPS-GDGPS 308
>At4g39580.1 68417.m05596 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 375
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 151 VGGPPTNAPTSSSKSISLQGPKWGAAPS 68
+GGP +AP+SS + Q KW APS
Sbjct: 136 IGGPINDAPSSSVSVLDCQCEKWREAPS 163
>At5g28520.1 68418.m03472 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 451
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 527 GLQPQTGRLARLGHHQWGGGGLVWEHVGTVLEGTKPV 637
GL PQ G + +L + Q GGGG+ W+H G G K V
Sbjct: 147 GLNPQVGHI-KLAY-QGGGGGIPWDH-GPNHNGVKRV 180
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 277 QEPRQHHLAVDSDLRGTASVHRRQLPSGPDSVPLLE 384
QEP + ++ V+++++G S+H+ PS + +LE
Sbjct: 173 QEPEEDNIPVETEMQGADSIHQTLAPSSLHAPSILE 208
>At5g57130.1 68418.m07135 expressed protein
Length = 920
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 497 VKQQWRTDCHGLQPQTGRLARLGHHQWG 580
+K++W C L QTG+L+ +G++ +G
Sbjct: 450 LKRKWNRFCETLHNQTGQLSMMGNYPYG 477
>At4g31430.2 68417.m04465 expressed protein
Length = 574
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -1
Query: 652 TSRKANGLGAFQDSSNMLPNESAASP-LMVPEPSKSP 545
TS++A+ +GA + +SN P+ S +SP +M +P +P
Sbjct: 441 TSKEADEIGASRHTSNGFPSSSPSSPAVMEGQPKPTP 477
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = -2
Query: 729 PILSPSR*AVAAQRDVSPSCMNFLSSPVERRTGLVPSRTVPTCSQTSPPPPH*WCPSRAS 550
P L+P ++ SP L P +++ PS PT ++ PPPP S ++
Sbjct: 111 PSLTPFVPHPTPKKSPSPPPTPSLPPPAPKKSPSTPSLPPPTPKKSPPPPPSHHSSSPSN 170
Query: 549 LPV*GCSP*QSVRHC 505
P +P + + C
Sbjct: 171 PPHHQQNPWEHIERC 185
>At1g63550.1 68414.m07184 hypothetical protein low similarity to
receptor-like protein kinase 5 [Arabidopsis thaliana]
GI:13506747; contains Pfam profile: PF01657 Domain of
unknown function DUF26
Length = 299
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 214 KSTKPKILSSASLAQTLSPSCVGGPPTNAPTSS 116
+S PK +SL QT SP V PP N P S
Sbjct: 236 RSPPPKSSPPSSLPQTPSPPLVFTPPQNVPNPS 268
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 622 FQDSSNMLPNES-AASPLMVPEPSKSPGLRLQPVTVCAPLLFHRPIHVP 479
FQ S + P S +A P P P SP L P T PL+F P +VP
Sbjct: 218 FQTSVLLSPPPSPSAPPPRSPPPKSSPPSSL-PQTPSPPLVFTPPQNVP 265
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -1
Query: 238 MSRALQSFKSTKPKILSSASLAQTLSPSCVGGPPTNAPTSS 116
+S A+ F +T LS +S + +LSPS P++AP SS
Sbjct: 12 LSIAILLFITTSSSSLSPSSSSPSLSPSPPSSSPSSAPPSS 52
>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
protein identical to gi|4775268|emb|CAB42531
Length = 150
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 211 STKPKILSSASLAQTLSPSCVG---GPPTNAPTSSSKSISLQGPKWGAAPSTGKV 56
S PK S + A T +P+ PT AP ++ KS S PK + + G V
Sbjct: 25 SASPKKSPSPTAAPTKAPTATTKAPSAPTKAPAAAPKSSSASSPKASSPAAEGPV 79
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 440 FQFECPLPV*CRN*IYRRVSSRGTESGPEGSC 345
+ +CP P C +++R+ +R + PE +C
Sbjct: 1252 YSVQCPSPTACEEELHKRIFARMSAKNPEPNC 1283
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 440 FQFECPLPV*CRN*IYRRVSSRGTESGPEGSC 345
+ +CP P C +++R+ +R + PE +C
Sbjct: 1249 YSVQCPSPTACEEELHKRIFARMSAKNPEPNC 1280
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = -3
Query: 656 PHQSKGERAWCLPGQFQHAPKRVRRLPTDGARAEQVSRSEVAARDSLCAIAVSPSNTCTD 477
P C G QH V+ + D +E++S + + A+D+ A+S +CT+
Sbjct: 411 PESQDASDPTCDQGGKQHISSEVKEV-LDAPASEEISDAVIVAKDNGSEAAISDGLSCTN 469
Query: 476 SSNGK 462
+
Sbjct: 470 QQGSE 474
>At4g14400.3 68417.m02222 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 604
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +1
Query: 178 RTPKTKFLVSCF*TTGVHVTSRSGSTTSRAVHGQEPRQHHLAVDSDLRGTASVHRRQLPS 357
R P +K+L++ +HV +++ ++ + + + HL V D+ G +H +
Sbjct: 286 RCPASKYLLNRLGQNILHVAAKNEASLTAYMLMHDKDTKHLGVGQDVDGNTPLHLAVMNW 345
Query: 358 GPDSVPLLETR 390
DS+ L +R
Sbjct: 346 DFDSITCLASR 356
>At4g14400.2 68417.m02221 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 604
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +1
Query: 178 RTPKTKFLVSCF*TTGVHVTSRSGSTTSRAVHGQEPRQHHLAVDSDLRGTASVHRRQLPS 357
R P +K+L++ +HV +++ ++ + + + HL V D+ G +H +
Sbjct: 286 RCPASKYLLNRLGQNILHVAAKNEASLTAYMLMHDKDTKHLGVGQDVDGNTPLHLAVMNW 345
Query: 358 GPDSVPLLETR 390
DS+ L +R
Sbjct: 346 DFDSITCLASR 356
>At4g14400.1 68417.m02220 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 670
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +1
Query: 178 RTPKTKFLVSCF*TTGVHVTSRSGSTTSRAVHGQEPRQHHLAVDSDLRGTASVHRRQLPS 357
R P +K+L++ +HV +++ ++ + + + HL V D+ G +H +
Sbjct: 352 RCPASKYLLNRLGQNILHVAAKNEASLTAYMLMHDKDTKHLGVGQDVDGNTPLHLAVMNW 411
Query: 358 GPDSVPLLETR 390
DS+ L +R
Sbjct: 412 DFDSITCLASR 422
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +1
Query: 118 WKWGHLSAGPPHNWGRGSAPRTPKTKFLVSCF*TTGV-----HVTSRSGSTTSRAVHGQE 282
W WG+ G G GS + + L+ C + G + + G+TT+ A +E
Sbjct: 251 WGWGYGGEG---QLGLGSRIKMVSSPHLIPCLESIGSGKERSFILHQGGTTTTSAQASRE 307
Query: 283 PRQHHLAVDSDLRGTASV 336
P Q+ A+ R +A++
Sbjct: 308 PGQYIKAISCGGRHSAAI 325
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 291 LPRFLAVNGPRGSTPTSGCHVHSSRSKA 208
LP V+ P STP S HSSRS++
Sbjct: 912 LPSGAGVSSPSSSTPASTTRRHSSRSRS 939
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 291 LPRFLAVNGPRGSTPTSGCHVHSSRSKA 208
LP V+ P STP S HSSRS++
Sbjct: 985 LPSGAGVSSPSSSTPASTTRRHSSRSRS 1012
>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
response factor 30 (GI:20145855) {Arabidopsis thaliana}
Length = 313
Score = 27.9 bits (59), Expect = 7.3
Identities = 27/107 (25%), Positives = 37/107 (34%)
Frame = +1
Query: 115 NWKWGHLSAGPPHNWGRGSAPRTPKTKFLVSCF*TTGVHVTSRSGSTTSRAVHGQEPRQH 294
+W WG S G NWG GS+ + + T H SGS S
Sbjct: 65 SWGWGWSSDGTDTNWGWGSSSGSNHSSG------TGSTHNGHSSGSNHSSGT--GSTHNG 116
Query: 295 HLAVDSDLRGTASVHRRQLPSGPDSVPLLETRR*IQFRHQTGSGHSN 435
H + + T S H S + T + H +GS HS+
Sbjct: 117 HSSGSNHSSSTGSTHNNHSSGSNHSSIVGSTHK----NHGSGSNHSS 159
>At3g25170.1 68416.m03143 rapid alkalinization factor (RALF) family
protein
Length = 76
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 261 RGSTPTSGCHVHSSRSKAR 205
RG P +GCH H+S K R
Sbjct: 38 RGPNPPAGCHPHNSHHKPR 56
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 244 SGSTTSRAVHGQEPRQHHLAVDSDLRGTASVHRRQ 348
SG+T + AV P +HH A S + ++V R Q
Sbjct: 19 SGTTNAAAVAPSSPARHHHARSSSVTNMSNVKRAQ 53
>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
similarity to peflin [Homo sapiens] GI:6015440; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 354
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = -1
Query: 217 FKSTKPKILSSASLAQTLSPSCVGGPPTNAPTSSSKSISLQGPK-------WGAAPSTG 62
+ ++KP+ SS+S A T S G PP +AP + S + PK +GA P +G
Sbjct: 50 YGASKPQ--SSSSSAPTYGSSSYGAPPPSAPYAPSPGDYNKPPKEKPYGGGYGAPPPSG 106
>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
protein, Candida albicans, PIR2:S58135
Length = 343
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 115 NWKWGHLSAGPPHNWGRGSA 174
+W WG S G NWG GS+
Sbjct: 69 SWGWGWSSDGTDTNWGWGSS 88
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 163 SPSCVGGPPTNAPTSSSKSISLQGPKWGAAPSTGKVCP 50
SPS V PP+ P+ S S P G +P + P
Sbjct: 451 SPSIVPSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTP 488
>At3g55760.2 68416.m06196 expressed protein
Length = 578
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 525 TGCNLRPGDLLGSGT-ISGEAADSFGSMLELSWKAPSPFAFRLVRRENSYRTETRHVAR 698
TG RP ++ T I G AD + W+A F F+ + E S R T +V R
Sbjct: 323 TGVEKRPDGVVCRWTMIRGVTADGVVEWQDKYWEASDDFGFKELGSEKSGRDATGNVWR 381
>At3g55760.1 68416.m06195 expressed protein
Length = 578
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 525 TGCNLRPGDLLGSGT-ISGEAADSFGSMLELSWKAPSPFAFRLVRRENSYRTETRHVAR 698
TG RP ++ T I G AD + W+A F F+ + E S R T +V R
Sbjct: 323 TGVEKRPDGVVCRWTMIRGVTADGVVEWQDKYWEASDDFGFKELGSEKSGRDATGNVWR 381
>At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 658
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 262 RAVHGQEPRQHHLAVDSDLRGTASVHRRQLPSGPDSVPL 378
+ VHG EPR H D+ G A + ++ S DS+PL
Sbjct: 485 KEVHGIEPRTEHYTCIIDMLGRAGL-LKEAKSFIDSLPL 522
>At2g43880.1 68415.m05455 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase 4 [Lycopersicon
esculentum] GI:2459815; contains Pfam profile PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 394
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 348 LSTMNGRSASKVTIHGEMVLPRFLAVNGPRGSTPTSGCHVHSS 220
LS+ N ++ H V + + P GS T G HV SS
Sbjct: 164 LSSFNSQNMHVTVHHSSNVRIENVRIRAPSGSPNTDGIHVQSS 206
>At2g15300.1 68415.m01745 leucine-rich repeat transmembrane protein
kinase, putative
Length = 744
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 202 PKILSSA-SLAQTLSPSCVGGPPTNAPTSSSKSISLQGPKWGAAPST 65
P LS ++++T SP+ P T PT+SS + Q K PST
Sbjct: 289 PSTLSDPPNISETTSPAIAVMPTTPTPTNSSTESTNQTAKSKLKPST 335
>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 630 LVPSRTVPTCSQTSPPPPH*WCPSRASLPV*GC 532
+V SRT P C + P PH C R P+ C
Sbjct: 1 MVYSRTKPPCRVSDPAQPHNLCRRRRPSPLSIC 33
>At1g54060.1 68414.m06160 expressed protein similar to
6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
GI:18149189
Length = 383
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 613 SSNMLPNESAASPLMVPEPSKSPGLRLQPVTVCAPLLFHRPIHVPIVRTANGG 455
S++ +ES P PE S LQP+ PL FH P + + ++ GG
Sbjct: 242 SASETESESDPEPEASPEESAESLPPLQPIQ---PLSFHMPKRLKVDKSGGGG 291
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,950,901
Number of Sequences: 28952
Number of extensions: 472342
Number of successful extensions: 1688
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1682
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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