Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20187
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu... 57 3e-09
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 28 1.8
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 27 2.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 3.1
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom... 27 3.1
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 4.0
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 5.4
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 26 5.4
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 25 9.4
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 9.4
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 9.4
>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 137
Score = 57.2 bits (132), Expect = 3e-09
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = +2
Query: 254 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWE 397
RI RA+QLS++ ILPK EWTK EED YL P++ +V ER ERE ++
Sbjct: 69 RIRRAMQLSIENKILPKSEWTKPEEDYHYLRPVLAEVIAERKEREAFD 116
Score = 33.5 bits (73), Expect = 0.035
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 138 NLSGFNKYGLLRDD-CLHETPDVTEALRRLP 227
+LSG+ KYGL DD L E D +AL RLP
Sbjct: 29 HLSGYRKYGLRYDDLMLEENDDTQKALSRLP 59
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -2
Query: 294 IVFCMESCMARTIRSFSRQQHGMEVCGVLQLHQEFHASNHPVT 166
+ FC ++C + R + G +C L+ + H + PVT
Sbjct: 169 VTFC-QNCATTNTPLWRRDESGNPICNACGLYYKIHGVHRPVT 210
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/36 (25%), Positives = 16/36 (44%)
Frame = -2
Query: 276 SCMARTIRSFSRQQHGMEVCGVLQLHQEFHASNHPV 169
+C + + + +HG VC L+ H N P+
Sbjct: 421 NCSSTKTSLWRKDRHGQTVCNACGLYARLHGHNRPI 456
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 664 FYLFNEIGSSIFIKDGLYGHFQIVMIKTKN 575
FYL ++G +F KDG F ++ TKN
Sbjct: 1834 FYLLRDVGLELFFKDG--RSFLTILSNTKN 1861
>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 287
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 338 IGNLLHILSTLL*VGLFFAWRAVWHVQYEVSLVNNMGWKSAECFSYI 198
+ NLL ++S L GL A + V + + E+ L N GW + F +
Sbjct: 109 VDNLLMVVSYLNDSGLIAATKKVQNSKGEIMLKANKGWLHDDSFQNV 155
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 83 HHGSCSKSHFIDSQIYDFNVILT 15
HHGS SK H I Q+ ++++LT
Sbjct: 474 HHGS-SKKHKIAEQLMSYDIVLT 495
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +2
Query: 254 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQW 394
R+ + + S ++ + ++ + YE D LT + ++E E + ++ W
Sbjct: 278 RVKKDLFASDEEDDVSADQLSSYERDKARLTQQIRELEAENVAKKSW 324
>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 183 LHETPDVTEALRRLPSHVVDERNFVLYVPYSSPCKKQSYLKKSGQNMKKIPYT*PQLLSK 362
L E D + + L HVV E NF +S + ++ + +P+T P LS+
Sbjct: 92 LEEENDDLDKIGALKLHVVSENNFPTAAGLASSAAGYAAFCEAIARLYDLPWT-PTQLSR 150
Query: 363 LRKRG 377
+ ++G
Sbjct: 151 IARQG 155
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 208 KHSADFHPMLLTRETSYCTCHT 273
+H H L R T+YCTC T
Sbjct: 55 EHLGKRHREFLPRVTAYCTCDT 76
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 126 KWAYNLSGFNKYGLLRDD 179
KW + + F++YGLL D+
Sbjct: 926 KWIFKVQHFSRYGLLDDE 943
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 143 KIVGPFAEAVTSVNSRGSESHHGSCSKSH-FIDSQIYDFN 27
K + P ++ +T N + + SH GS +KSH F ++D N
Sbjct: 320 KELSPHSQ-ITLSNVKNNHSHVGSQTKSHSFATPSVFDNN 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,219
Number of Sequences: 5004
Number of extensions: 62987
Number of successful extensions: 161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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