Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20187
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0744 + 5687269-5687365,5687466-5687689,5688307-5688354,568...    34   0.15 
03_06_0379 + 33505242-33505347,33505474-33505631,33506127-335061...    34   0.15 
04_01_0056 - 579934-579993,580064-580243,580349-580507,581004-58...    29   5.6  
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662...    28   9.7  

>07_01_0744 +
           5687269-5687365,5687466-5687689,5688307-5688354,
           5689057-5689125
          Length = 145

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 144 SGFNKYGLLRDDCL--HETPDVTEALRRLPSHVVDERN 251
           S   KYGL  DD    +   D+ EAL RLP  VVD RN
Sbjct: 27  SRLRKYGLRYDDLYDPYHDLDIKEALARLPREVVDARN 64


>03_06_0379 +
           33505242-33505347,33505474-33505631,33506127-33506174,
           33506851-33506919
          Length = 126

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 17/46 (36%), Positives = 29/46 (63%)
 Frame = +2

Query: 254 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQ 391
           R+ RA+ LSM+   L + +  +      YL+ +++ V+KERLERE+
Sbjct: 69  RLKRAMDLSMKHQYLSENDQAQQTPFRGYLSDMMDLVKKERLEREE 114



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 144 SGFNKYGLLRDDCL---HETPDVTEALRRLPSHVVDERNFVLYVPYSSPCKKQSYLKKSG 314
           S   KYGL  DD     H+  D+ EAL RLP  VVD R+  L        K Q YL ++ 
Sbjct: 30  SRLRKYGLRYDDLYDPKHDL-DIKEALERLPREVVDARHQRLKRAMDLSMKHQ-YLSEND 87

Query: 315 Q 317
           Q
Sbjct: 88  Q 88


>04_01_0056 -
           579934-579993,580064-580243,580349-580507,581004-581050,
           583772-583895,584093-584956
          Length = 477

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 224 SIPCC*REKLRIVRAIQLSMQKTILPKEEWTKYEED 331
           S+PCC  E+ R++R   L +  TIL +  +   + D
Sbjct: 425 SLPCCELEESRLIRIRALDVMMTILQQSSFPSSKHD 460


>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
            21366685-21366813,21366999-21367103,21367196-21367387,
            21367486-21367639,21368148-21368209,21368291-21368437,
            21368517-21368564,21369091-21369228,21369305-21369451,
            21370579-21370665,21370754-21370861,21370941-21371041,
            21371870-21371996,21372820-21372936,21373029-21373106,
            21373240-21373284,21373637-21373756,21373838-21373964,
            21374033-21374253,21374347-21374529,21374772-21374924,
            21375051-21375146,21375226-21375331,21375410-21375492,
            21375576-21375728,21375819-21376058,21376367-21376414,
            21376782-21376928,21377007-21377115,21377200-21377345,
            21377715-21377809,21377944-21378049,21378177-21378368,
            21378456-21378686,21378772-21378866,21379426-21379529,
            21380040-21380284,21380300-21380347,21380376-21380480,
            21380630-21380767,21381458-21381649,21381738-21381914,
            21382001-21382129,21382203-21382316,21382407-21382746,
            21382836-21383064,21383155-21383455,21384311-21384358,
            21387963-21388355
          Length = 2493

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 703  FPRDHCHIFKFNTFYLFNEIGSSI 632
            +P +H H F F   YLF+E    I
Sbjct: 2393 YPNNHTHYFSFIILYLFSEANQEI 2416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,272,488
Number of Sequences: 37544
Number of extensions: 339617
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)