Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20187
(790 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37) 59 5e-09
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 31 1.1
SB_14272| Best HMM Match : Sugar_tr (HMM E-Value=0.0046) 30 1.9
SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28) 29 5.7
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 28 7.5
SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6) 28 7.5
SB_44511| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05) 28 9.9
SB_10734| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_9803| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_1225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)
Length = 116
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = +2
Query: 254 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 403
RIVRAI +M+ LP+E WTK ED YL P++++V+ ER ERE W+K+
Sbjct: 67 RIVRAIDTTMKMKWLPEELWTKPSEDVPYLDPVIQKVKAERKERELWDKQ 116
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 111 SDSLSKWAYNLSGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNF 254
S + +W G+ + GL R+D + E DV EA+RR+P + RNF
Sbjct: 19 SAAFREWYIYACGYRQIGLKREDLIIEDSDVAEAVRRIPEEERNLRNF 66
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 245 EKLRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLERE-QWEKEY 406
E L + LS + T P + T E+D L L + Q EK+ ER+ +W + Y
Sbjct: 92 EALALAIQASLSSEPTQQPTKPLTVQEQDDLALAQALAQSEKDEAERKRRWGESY 146
>SB_14272| Best HMM Match : Sugar_tr (HMM E-Value=0.0046)
Length = 775
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 329 DSLYLTPIVEQVEKERLEREQWEKEY*MRHGIVVLFN*NKYSS*LFVLFYLCC 487
D L ++E V +++LER + + + R+ ++ L K F+LFY CC
Sbjct: 354 DEQALRELIEDVRRDQLERHKMDDK---RYTMMDLVRTPKLRKRSFILFYTCC 403
>SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)
Length = 466
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 275 LSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLERE 388
LS KT LPKE+W K E++S P V Q ++ +R+
Sbjct: 8 LSPPKT-LPKEQWAKREKNSEGFKPGVMQEKRTLFKRD 44
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 269 IQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 403
I+ S+QKT PK++ + E+D E+ EK++ ++E E++
Sbjct: 1868 IEKSLQKTFHPKKKENEEEDDKKEKKEENEEEEKKKKKKENEEED 1912
>SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)
Length = 339
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 266 HVQYEVSLVNNMGWKSAECFSYIRS 192
H Y+VS V NMGW S ++IRS
Sbjct: 141 HSDYQVSAVLNMGWASNVKDNWIRS 165
>SB_44511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 278 SMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 403
S + +L ++E K EE + LTP ++ +LE+++ EKE
Sbjct: 8 SNEHLLLNEKEPPKKEEPKIVLTPEEQEELDRKLEKQRMEKE 49
>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
Length = 889
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +2
Query: 242 REKLRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKE--RLEREQWEKE 403
+EK+RI + +++ + + + + + E+D+L E+ E+E R ERE+ EK+
Sbjct: 373 QEKIRIEKEKEIARLRALQERAKDVQAEKDALRAKRNQEEAEREWRRKEREEAEKQ 428
>SB_10734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 706 YFPRDHCHIFKFNTFYLFNEIGSSIFIKDGLYGHFQIVMIKTKN 575
YFPRD Y FN GS +F G+YG Q +++ N
Sbjct: 3 YFPRD----------YYFNYYGSQVFDPAGIYGQSQSQIVEQPN 36
>SB_9803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 706 YFPRDHCHIFKFNTFYLFNEIGSSIFIKDGLYGHFQIVMIKTKN 575
YFPRD Y FN GS +F G+YG Q +++ N
Sbjct: 3 YFPRD----------YYFNYYGSQVFDPAGIYGQSQSQIVEQPN 36
>SB_1225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 706 YFPRDHCHIFKFNTFYLFNEIGSSIFIKDGLYGHFQIVMIKTKN 575
YFPRD Y FN GS +F G+YG Q +++ N
Sbjct: 3 YFPRD----------YYFNYYGSQVFDPAGIYGQSQSQIVEQPN 36
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,929,917
Number of Sequences: 59808
Number of extensions: 422889
Number of successful extensions: 1219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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