Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20187
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006684-9|AAF39958.1| 130|Caenorhabditis elegans Hypothetical ... 46 3e-05
Z22181-1|CAA80179.1| 710|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81139-4|CAB03479.2| 358|Caenorhabditis elegans Hypothetical pr... 30 1.6
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 2.9
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 29 2.9
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr... 29 5.0
U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t prot... 29 5.0
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 29 5.0
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 29 5.0
Z82057-2|CAD89759.1| 561|Caenorhabditis elegans Hypothetical pr... 28 8.8
>AC006684-9|AAF39958.1| 130|Caenorhabditis elegans Hypothetical
protein T02H6.11 protein.
Length = 130
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/50 (36%), Positives = 34/50 (68%)
Frame = +2
Query: 242 REKLRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQ 391
+ K+R+ RA L++ LPK EWT+++++S YL P ++++E E+ R +
Sbjct: 68 QRKIRLSRAHTLALHGEKLPKAEWTQWDQESWYLKPYLDEIEAEKKARAE 117
Score = 35.5 bits (78), Expect = 0.044
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Frame = +3
Query: 111 SDSLSKWAY-NLSGFNKYGLLRDDCLHE-TPDVTEALRRL---PSHVVDERNFVL 260
+ +L K+A+ NL G +YGL D E P+VTEALRRL HV D+R L
Sbjct: 19 ASTLRKFAWSNLWGGREYGLQFHDTYFEPAPEVTEALRRLNLQEPHVFDQRKIRL 73
>Z22181-1|CAA80179.1| 710|Caenorhabditis elegans Hypothetical
protein ZK632.2 protein.
Length = 710
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 272 QLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 403
+L MQ+ L ++ E+D LYL Q+EK+R +R+QW +E
Sbjct: 360 KLRMQRKTLEANDYYD-EDDDLYLDR-TGQLEKQREKRKQWAEE 401
>Z81139-4|CAB03479.2| 358|Caenorhabditis elegans Hypothetical
protein W05H5.4 protein.
Length = 358
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 205 LKHSADFHPMLLTRETSYCTCHTALHAKNNPT*RRVDKI*RRFPILNPN 351
+K+S DF + T +CTC L ++ T + +++ +FPI NPN
Sbjct: 144 IKYSVDFLNIFCYCTTIFCTCALGLLDEDQLTAK--NRVYEKFPIPNPN 190
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 275 LSMQKTILPKEEWTKYEEDSLYLTPIVE--QVEKERLEREQWEKE 403
LS+ K +L K++ + E++ L Q EKERLERE EKE
Sbjct: 216 LSLIKEMLKKQQEEREEQERLQKEQQERDAQEEKERLEREHAEKE 260
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 275 LSMQKTILPKEEWTKYEEDSLYLTPIVE--QVEKERLEREQWEKE 403
LS+ K +L K++ + E++ L Q EKERLERE EKE
Sbjct: 216 LSLIKEMLKKQQEEREEQERLQKEQQERDAQEEKERLEREHAEKE 260
>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical protein
F11C1.5a protein.
Length = 1804
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 245 EKLRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 400
E + +R I +S ++ W K + S L +++Q+E ++ ERE W K
Sbjct: 1521 EYAKKLREINMSEYDADAYEKVWNKVQAPSRKLASVIDQLEAKKKERE-WTK 1571
>U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t protein
3, isoform c protein.
Length = 279
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 314 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 403
T+ E++ L + E+ EK +LEREQ EKE
Sbjct: 81 TEREKEEEELKKLKEKQEKRKLEREQEEKE 110
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 314 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 403
T+ E++ L + E+ EK +LEREQ EKE
Sbjct: 915 TEREKEEEELKKLKEKQEKRKLEREQEEKE 944
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 314 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 403
T+ E++ L + E+ EK +LEREQ EKE
Sbjct: 81 TEREKEEEELKKLKEKQEKRKLEREQEEKE 110
>Z82057-2|CAD89759.1| 561|Caenorhabditis elegans Hypothetical
protein T26H8.4 protein.
Length = 561
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 668 IKFKYVAMVSWKVIKK*IYFICLCT 742
+K KY+ K+ I+FICLCT
Sbjct: 212 LKAKYILRTIGKINSSTIFFICLCT 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,899,649
Number of Sequences: 27780
Number of extensions: 344698
Number of successful extensions: 1065
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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