Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20187
(790 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32470.2 68417.m04623 ubiquinol-cytochrome C reductase comple... 32 0.38
At4g32470.1 68417.m04622 ubiquinol-cytochrome C reductase comple... 32 0.38
At2g27440.1 68415.m03316 rac GTPase activating protein, putative... 31 0.87
At5g25450.1 68418.m03023 ubiquinol-cytochrome C reductase comple... 31 1.2
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 29 3.5
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 28 6.1
At2g22720.3 68415.m02692 expressed protein 28 6.1
At2g22720.2 68415.m02691 expressed protein 28 6.1
At2g22720.1 68415.m02693 expressed protein 28 6.1
At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi... 28 8.1
>At4g32470.2 68417.m04623 ubiquinol-cytochrome C reductase complex
14 kDa protein, putative similar to SP|P48502
Ubiquinol-cytochrome C reductase complex 14 kDa protein
(EC 1.10.2.2) (CR14) {Solanum tuberosum}; contains Pfam
profile PF02271: Ubiquinol-cytochrome C reductase
complex 14kD subunit
Length = 101
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 156 KYGLLRDDCLHE--TPDVTEALRRLPSHVVDERN 251
+YGL DD + + D+ EA+ RLP VVD RN
Sbjct: 30 RYGLRYDDLYDQYYSMDIKEAMNRLPREVVDARN 63
>At4g32470.1 68417.m04622 ubiquinol-cytochrome C reductase complex
14 kDa protein, putative similar to SP|P48502
Ubiquinol-cytochrome C reductase complex 14 kDa protein
(EC 1.10.2.2) (CR14) {Solanum tuberosum}; contains Pfam
profile PF02271: Ubiquinol-cytochrome C reductase
complex 14kD subunit
Length = 122
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 156 KYGLLRDDCLHE--TPDVTEALRRLPSHVVDERN 251
+YGL DD + + D+ EA+ RLP VVD RN
Sbjct: 30 RYGLRYDDLYDQYYSMDIKEAMNRLPREVVDARN 63
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 254 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLERE 388
R+ RA+ LSM+ LPK+ YL ++ VE+E ERE
Sbjct: 65 RLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLALVERESKERE 109
>At2g27440.1 68415.m03316 rac GTPase activating protein, putative
similar to rac GTPase activating protein 3 [Lotus
japonicus] GI:3695063; contains Pfam profiles PF00620:
RhoGAP domain, PF00786: P21-Rho-binding domain
Length = 368
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 333 ESSSYFVHSSLGRIVFCMESCMARTIRSFSRQQHGMEV 220
E S + +S+GRIVF + C +R I + ++H M++
Sbjct: 52 ELSRFGSSASVGRIVFELSRCFSRDIMAEENERHAMDI 89
>At5g25450.1 68418.m03023 ubiquinol-cytochrome C reductase complex
14 kDa protein, putative similar to SP|P48502
Ubiquinol-cytochrome C reductase complex 14 kDa protein
(EC 1.10.2.2) (CR14) {Solanum tuberosum}; contains Pfam
profile PF02271: Ubiquinol-cytochrome C reductase
complex 14kD subunit
Length = 122
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 156 KYGLLRDDC---LHETPDVTEALRRLPSHVVDERN 251
+YGL DD L++ D+ EAL RLP +VD RN
Sbjct: 30 RYGLRYDDLYDPLYDL-DIKEALNRLPREIVDARN 63
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 254 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 400
RI ++ + QK +PK++ + ED L PI+++ KE E E E+
Sbjct: 466 RIFECVKENGQKGFVPKQDSKREPEDDLETKPILKK-HKENSEEENKEQ 513
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 242 REKL-RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKEY 406
RE+L RI + L +K E+W L I E++++ LE +Q E+EY
Sbjct: 514 RERLNRIETELVLLKEKQAELTEQWEHERSVMSRLQSIKEEIDRVNLEIQQAEREY 569
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = +2
Query: 281 MQKTILPKEEWTKYEEDSLYLTPIVEQVEKE-----RLEREQWEKE 403
M + +LP + +++Y++D + + E ++KE R+ RE+ E+E
Sbjct: 503 MLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREEDERE 548
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = +2
Query: 281 MQKTILPKEEWTKYEEDSLYLTPIVEQVEKE-----RLEREQWEKE 403
M + +LP + +++Y++D + + E ++KE R+ RE+ E+E
Sbjct: 606 MLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREEDERE 651
>At2g22720.1 68415.m02693 expressed protein
Length = 340
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = +2
Query: 281 MQKTILPKEEWTKYEEDSLYLTPIVEQVEKE-----RLEREQWEKE 403
M + +LP + +++Y++D + + E ++KE R+ RE+ E+E
Sbjct: 274 MLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREEDERE 319
>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 895
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 129 WAYNLSGFNKYGLLRD 176
WA +SGFN+YG LR+
Sbjct: 519 WASMISGFNEYGYLRE 534
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,616,749
Number of Sequences: 28952
Number of extensions: 303988
Number of successful extensions: 791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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