Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20184
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    27   2.9  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   5.1  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    26   5.1  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   6.8  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    26   6.8  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.8  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   9.0  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   9.0  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 136 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYK 252
           QR    K+D+KEK +    ++A V+ +E+A   L+ A K
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKK 246


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 661 PARSPSPGCPSADVRSPGPA 602
           PA  P+PG P  + R P PA
Sbjct: 521 PAGGPAPGYPGMNARGPVPA 540


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 557 MRASLMRCSGSKPFK*TEPFSFPLRTFFPSTCTDASVSR-IPVRNFA 420
           M++SL     S+P     P SFP +    S+   +SV R + + NFA
Sbjct: 180 MQSSLYVSPSSQPLDRFSPASFPSKETLTSSSLSSSVPRSVSLSNFA 226


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = +2

Query: 260 LGRIKTRLPTLWRSHIDVLIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQV 439
           L ++KTR PT+    + V I+ G ++P  +V    E       I S +  +    + EQ 
Sbjct: 526 LEKVKTREPTVVMGMVTVYISAGAIIPEETVH---EQVIPRLWILSVSPSL----SLEQ- 577

Query: 440 FVKLMRRYKYL-EKMFEEEMKKVLST*KASIPN 535
           + K MR  + L + + +   KK+ S   + +PN
Sbjct: 578 YNKCMREIRSLSDAVQKSHAKKLQSKPSSVVPN 610


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 408 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 307
           SSL + M V    DSP ++ E  G S  P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -3

Query: 712 AVTSE*RRAPA**SRTLPARSPSPGCPSADVRSPGPAARMEARIRYRST--VQSCAPA*C 539
           AV S     PA  S T+P  SP+ G P+    +P P A   A   Y ST    S  P+  
Sbjct: 289 AVGSSRGSTPA--SATVPI-SPARGFPTTSAYNPAPPAYGMANPAYGSTGIRSSSIPSSG 345

Query: 538 AVRDRSLSS 512
           ++R  SL++
Sbjct: 346 SIRSPSLTT 354


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/57 (22%), Positives = 32/57 (56%)
 Frame = +2

Query: 143 SRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTSTRLGRIKTRLPTLWRSHIDV 313
           SRP+     +S T ++S+       + P+  S++PT+++LG  + +   + +++ D+
Sbjct: 214 SRPDSTSTTKSKTSSISSAR-----ARPIRASSRPTASKLGASRPQKLGIKKANADI 265


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 486 SNIFSKYLYRRISFTNTCSKFRMVSISSLAE 394
           S  FS++ Y    F NTC  F +    S  E
Sbjct: 460 SKRFSRFYYGHYVFVNTCHNFFLTLYQSFTE 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,279
Number of Sequences: 5004
Number of extensions: 65831
Number of successful extensions: 221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)