Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20184
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 52 5e-07
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764... 32 0.44
03_05_0362 + 23455372-23455619,23456570-23456966,23457400-23457561 31 1.3
03_05_0600 + 26021863-26022469,26022562-26022992 30 1.8
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 30 2.3
01_06_1226 - 35518981-35519295,35519876-35520745 30 2.3
04_03_0397 - 15362353-15363383,15385301-15385910,15386890-153870... 29 4.1
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 29 4.1
12_01_0779 + 7129879-7130398,7130585-7130664 29 5.4
01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976 29 5.4
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129... 28 7.1
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 28 7.1
12_02_0749 - 22758317-22760407 28 9.4
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 28 9.4
09_04_0350 + 16899076-16900164 28 9.4
03_05_0871 + 28396964-28399843 28 9.4
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 52.0 bits (119), Expect = 5e-07
Identities = 58/205 (28%), Positives = 86/205 (41%), Gaps = 7/205 (3%)
Frame = +1
Query: 76 NLLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKY 255
+L +S+ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+ K
Sbjct: 59 DLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVAK- 114
Query: 256 *TRPDQNSTTDAMAKSYRCTHCWRPAAAGRF--GVDGRRIAQDQHLHLLRQ*GYGHHAKF 429
++D Y T GR G ++H + + A
Sbjct: 115 -----SIESSDLNFSRYGDTFFEVVFIGGRTQPGTIKPEEEGERHPYSVLDCAAQREAIL 169
Query: 430 RT--GIRETDASVQVLGKNVRRGNEKGSVYLKGFDPEQRIKLARMTALWIG---NGCVPP 594
+ I++T L KN+ K L+ F+ +R KLA TAL +G P
Sbjct: 170 PSVLYIQKTLRRRPFLIKNLENVMRKFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPE 229
Query: 595 SVLLVLVNEHLLKDNLAMDFVLEVF 669
+V L+ ++L+ + + F+ E F
Sbjct: 230 TVFQPLLKDNLVSKGIVLSFITEFF 254
>10_04_0020 +
7644329-7644666,7644960-7645146,7645311-7645365,
7645390-7645438,7645984-7646200
Length = 281
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 582 MRASIRAAGPGERTSAEGQPGDGLRAGSVRDHQAGARRHS 701
+R ++R AG G+ GQPG G RAG + Q GA + S
Sbjct: 123 LRGALRHAGSGKELGLWGQPGRGKRAGRL-GGQMGAEQRS 161
>03_05_0362 + 23455372-23455619,23456570-23456966,23457400-23457561
Length = 268
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/71 (36%), Positives = 35/71 (49%)
Frame = +2
Query: 194 ATLWYRVWSGPVAISTQPTSTRLGRIKTRLPTLWRSHIDVLIAGGLLLPGGSVSMDGESP 373
A L V + VA S QP ++ + R+ RL L H++ + GG GG S G SP
Sbjct: 106 AELTELVMASAVAASHQPAASVMARVD-RLD-LVVGHLEEMRRGG---GGGRRSSCGGSP 160
Query: 374 KTNTCIFSANE 406
T T S+NE
Sbjct: 161 STTTTTVSSNE 171
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 363 PSIDTEPPGSSRPPA 319
PS+D EPPG S PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = +2
Query: 296 RSHIDVLIAGGLLLPGGSVSMDGE------SPKTNTCIFSANEDMDTMRN-FEQVFVKLM 454
RSH++V L+ PG V D + + K I + E ++ RN E+V +
Sbjct: 87 RSHVNVGYGSPLVFPGNQVGDDSDDGIKVTNEKLRAVIRKSKEVLEIHRNLLEKVHKLKI 146
Query: 455 RRYKYLEKMFEEEMKKVLS 511
+ Y L K+ E KK+ S
Sbjct: 147 QDYYELPKISASERKKITS 165
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 455 ASVSRIPVRNFAWCPYPHWRRRCRCWSWAIRRPSTPNRPAAAGR 324
A +S P F P+ RR+ RC W + + P AAG+
Sbjct: 194 AMMSGCPEVGFGEAPFAEGRRKARCLMWVSKVAAGEAAPPAAGK 237
>04_03_0397 -
15362353-15363383,15385301-15385910,15386890-15387096,
15388287-15388313,15388397-15388471
Length = 649
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 340 RQQQAASNEYIDMTSP*RR*SSFDPAESSTCRLRRDRHRPAPDPVPE 200
R++Q + I+ P R+ + R R RH P PDPV E
Sbjct: 280 RERQQLEQQEIERQLPSRQQLEQQEIKPMPPRTRHGRHEPTPDPVSE 326
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 661 PARSPSPGCPSADVRSPGPAARMEARIRYRSTVQSCAPA 545
PA P+P P +P PAA+ E R R + Q PA
Sbjct: 211 PAPVPAPAPPPPPAAAPAPAAQPEQRDRDAALDQFATPA 249
>12_01_0779 + 7129879-7130398,7130585-7130664
Length = 199
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 661 PARSPSPGCPSADVRSPGPAA-RMEARIRYRSTVQSCAPA*CA 536
P PSP P+ + SPG + ++AR++Y + +C C+
Sbjct: 157 PPPMPSPSIPNWKISSPGDSPDEVKARLKYWAQAVACTVRLCS 199
>01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976
Length = 363
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 215 WSGPVAISTQPTSTRLGRIKTRLPTLWRSHIDVLIAGGLLLPGGSVSMDGESP 373
+ V+ + L + T++P + ++D ++GGL GG+VS SP
Sbjct: 14 YGSDVSFMNHSPAAALPAVPTQIPRVAGGYLDGNVSGGLPHFGGAVSSSSSSP 66
>07_01_0183 +
1297445-1297796,1297896-1298424,1298548-1298630,
1298901-1298989,1299091-1299164,1300196-1300246,
1300439-1300515,1302199-1302863
Length = 639
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 666 HFQHEVHRQVVLQQMFVHQDQQHGWRHASVT 574
H H +Q QQ HQ QQHG SVT
Sbjct: 37 HVHHHQQQQQQQQQQQHHQQQQHGLFFPSVT 67
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 179 TRTVSATLWYRVWSGPVAISTQPTSTRLGRIKTRLPTLWRSHID 310
T+T+S LW + G ++ PT+T + + +R+ L R D
Sbjct: 325 TKTISTILWAMLIKGRKTLTCAPTNTSILEVASRIVRLVRGCSD 368
>12_02_0749 - 22758317-22760407
Length = 696
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 398 RRRCRCWSWAIRRPSTPNR 342
RRRCR S A RRP TP R
Sbjct: 14 RRRCRRLSGANRRPETPPR 32
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/60 (33%), Positives = 24/60 (40%)
Frame = -3
Query: 349 RTARQQQAASNEYIDMTSP*RR*SSFDPAESSTCRLRRDRHRPAPDPVPERRGNRSGHTS 170
R AR+ A+N+ P R S PA DR P P P+R RS H S
Sbjct: 825 REARESSGANNDSTTSMRPKARSRSSQPA---------DRSAPPPPASPDRHSRRSPHRS 875
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -2
Query: 431 RNFAWCPYPHWRRRCRCWSW 372
R W + WR+R CW W
Sbjct: 245 RRRTWRQHGEWRQRSGCWQW 264
>03_05_0871 + 28396964-28399843
Length = 959
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 508 VYLKGFDPEQRIKLARMTALWIGNGCVP 591
+YL F E I ++++ LWIG+ +P
Sbjct: 442 MYLGAFKEETEISVSKLIKLWIGDDFIP 469
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,603,715
Number of Sequences: 37544
Number of extensions: 516412
Number of successful extensions: 2091
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2089
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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