Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20184
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20) 68 1e-11
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 30 2.3
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 29 4.1
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 5.4
SB_9726| Best HMM Match : PALP (HMM E-Value=1e-19) 29 5.4
SB_7955| Best HMM Match : SH3_1 (HMM E-Value=0.77) 29 5.4
SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5) 28 7.2
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1) 28 7.2
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11) 28 7.2
SB_52932| Best HMM Match : Ank (HMM E-Value=0) 28 9.5
SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3) 28 9.5
SB_10243| Best HMM Match : Ank (HMM E-Value=0) 28 9.5
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08) 28 9.5
>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
Length = 457
Score = 67.7 bits (158), Expect = 1e-11
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Frame = +2
Query: 308 DVLIAGGLLLPGGSVSMDGESP---KTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEK 478
DVL A PGGS+ DG +P KTN CIF AN D +T+R Q+ KL+ RY+YL+K
Sbjct: 54 DVLFAA----PGGSIVEDGPNPSTYKTNICIFEANNDNETLRKHVQMHNKLICRYRYLQK 109
Query: 479 MFEEEMKKVL 508
+E+EM K+L
Sbjct: 110 SYEDEMNKIL 119
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +1
Query: 163 EKEKYDPNGFRDALVQG---LERAGGDLDAAYKY 255
EKEK+ P GFRDA++ G L G DL+ K+
Sbjct: 2 EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKF 35
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 529 PEQRIKLARMTALWIGNGCVPPSVLLVLVN 618
PE++ ++ ++ LW NG PP V+ L+N
Sbjct: 92 PEEQGRIVKVLNLWQKNGIFPPEVIQPLIN 121
>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 490 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 383
+F H VPT QF++Y EIS + I +GG G
Sbjct: 140 VFAHIISTEVPTVQFNQYWVEISDAL-ISLGGVSQG 174
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 669 EHFQHEVHRQV-VLQQMFVHQDQQHGWRHASVT 574
EH E+HRQ+ +LQQ +Q H + VT
Sbjct: 1843 EHENQELHRQIQILQQQLAETEQSHARKLVEVT 1875
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Frame = +1
Query: 133 GQRIKTRKRDEK-----EKYDPNGFRDALVQGLER 222
G++ K RK DEK +K+DP+G LV+ LER
Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 104 VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSGP 226
V R K + RV + + R+R + LWYR WS P
Sbjct: 560 VEREKREKERVQKKLEKDKERERQREQKRKEALWYREWSRP 600
>SB_9726| Best HMM Match : PALP (HMM E-Value=1e-19)
Length = 337
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 134 VNGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTSTRLGR 268
++G PE + ++ +T+S +LW S P+ T +T L R
Sbjct: 283 LSGQLPELKGKRDQFAKTISRSLWRDSKSRPLVYETSALTTELQR 327
>SB_7955| Best HMM Match : SH3_1 (HMM E-Value=0.77)
Length = 1002
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 588 ASIRAAGPGERTSAEGQPGDGLRAGSVRDHQ 680
A +AA GE AEG PG LR G ++Q
Sbjct: 33 ARAKAASFGEGDKAEGAPGGELRYGGAAEYQ 63
>SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5)
Length = 114
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 490 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 383
+F H VPT QF++Y EIS + I +GG G
Sbjct: 11 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 45
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 490 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 383
+F H VPT QF++Y EIS + I +GG G
Sbjct: 1227 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 1261
>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
Length = 1282
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -1
Query: 666 HFQHEVHRQVVLQQMFVHQDQQHGWRHASVTDPQCSHARQLD-----ALFGIEAFQVDRT 502
H Q+ + + V ++ +H+D Q+ W HA V+ CS + A++ I VD
Sbjct: 63 HKQYPLGQAVSMKTCSIHEDMQYPWGHA-VSMGTCSINGDMQYPWGHAMYSIPCAHVD-V 120
Query: 501 FFISSS 484
F I+SS
Sbjct: 121 FHIASS 126
>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 490 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 383
+F H VPT QF++Y EIS + I +GG G
Sbjct: 133 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 167
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 447 FTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 319
+ + S+ R +++++ ++QV PSI ++PP PPA
Sbjct: 127 YQRSTSQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169
>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 490 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 383
+F H VPT QF++Y EIS + I +GG G
Sbjct: 131 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 165
>SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)
Length = 285
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 490 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 383
+F H VPT QF++Y EIS + I +GG G
Sbjct: 133 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 167
>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
Length = 1266
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 528 IEAFQVDRTFFISSSNIFSKYLYRRISFTNTCSKFRMVSISSLAE 394
+EA+ V R ++ +NIF+ L R+IS TNT S S S+ E
Sbjct: 1044 LEAYSVVR---MNDNNIFTSTLQRKISCTNTDSSSTPTSESNQKE 1085
>SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)
Length = 109
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 404 EDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKV 505
+DM MR Q++ K MRR + L +M ++M+++
Sbjct: 68 KDMRRMRGLHQMWAKDMRRMRSLPQMRAKDMRRM 101
>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
Length = 475
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 528 IEAFQVDRTFFISSSNIFSKYLYRRISFTNTCSKFRMVSISSLAE 394
+EA+ V R ++ +NIF+ L R+IS TNT S S S+ E
Sbjct: 240 LEAYSVVR---MNDNNIFTSTLQRKISCTNTDSSSTPTSESNQKE 281
>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
Length = 409
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 256 STCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLFFWS*S-VDPIILVF 116
S C + RDR+ P+ R + HT++ +F W S V +I ++
Sbjct: 27 SLCAITRDRYLAVTSPLQYLRRMPNAHTAVQIVFCWVTSLVSAVITIY 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,912,935
Number of Sequences: 59808
Number of extensions: 535190
Number of successful extensions: 1789
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1782
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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