Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20183
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         26   0.30 
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   6.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   6.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.7  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 403 IERGIAKVYEDLIDSPGIDSEEINSCLNGYP 495
           I   +A+V+E  +   G+D+EEI   L  YP
Sbjct: 16  IHEEVAQVWEQTLQK-GLDTEEIKDLLQKYP 45


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 393 YFLVIIL*ANYLVTRV 346
           +F VIIL +NY  TR+
Sbjct: 105 FFWVIILMSNYAFTRI 120


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = -2

Query: 223 IFFFH*LHHEFSCSWVYFVIN 161
           I++F+ +H  F C+++ F ++
Sbjct: 258 IYYFYYMHLLFCCAFIIFTMH 278


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 432 FVNLSNTSLDQLHYFLV 382
           FVN  N S + L YF++
Sbjct: 299 FVNRGNVSFNSLKYFVL 315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,176
Number of Sequences: 336
Number of extensions: 3731
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)