Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20183
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    54   3e-08
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   7.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.5  

>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 25/58 (43%), Positives = 38/58 (65%)
 Frame = +1

Query: 256 VLASNNVGLKGSLVDELGYPRDDIDVYEVRHARHKIICLQNDHKKVMQLIERGIAKVY 429
           VL    V +   L+ E G+PR DIDV  +R ARH+II L+NDH+++   I++ + KV+
Sbjct: 24  VLLKERVTMDTPLLTEDGFPRSDIDVPSIRTARHEIITLRNDHRELEDQIKKVLEKVF 81



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
 Frame = +3

Query: 531 FATISFVDKGSPAEEAGLRAHDELVQFGSVNYKNFKDVSQIMRIVSHSINYGITV-IVRR 707
           F  +  V   SPA+EAGL   DEL     V+ +N   +S++   +S+++N  + V ++R 
Sbjct: 129 FCVVDSVAVESPAQEAGLCIGDEL-----VHVQNVTSLSELPTFISNNVNKTLDVLLIRG 183

Query: 708 ENAD-----LTFELVPKPWAKPG 761
            +AD     +  +L P  W  PG
Sbjct: 184 YSADGSTNLVELKLTPHKWQGPG 206


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 630 NFKDVSQIMRIVSHSINYGITVIVRRENADL 722
           NFK + + +   SH IN  +T ++ +ENA +
Sbjct: 26  NFKHILRHLEHESHVINSTLTTLISQENASM 56


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 226 NRTFDSWSLRVLASNNVGLKGSLVDELGYPRDDIDVYEVRH 348
           N+   SW+L +  SN++ L   +VD      +++ +  V+H
Sbjct: 221 NKHCTSWNLDMSKSNSLNLDSIIVDTSSISFEELHITGVKH 261


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 39/122 (31%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
 Frame = -1

Query: 602  QFIVST-KTSLFSR*TFIHKTDSSKSWIIDSL---TFLKTG*PFKHEFISSLSIPGLSIK 435
            QF  ST  T      T  H T +S S+    L   T   T    +  F SS  +PGLS K
Sbjct: 3709 QFTHSTFSTGSTMHNTVSHATSTSSSFTTSHLPTNTLASTFDNSQSIFSSSSGVPGLSTK 3768

Query: 434  SS*TLAIPLSISCITFL*SFCRQIIL*RACLTS*TSMSSRGYPSSSTKEPFKPTLLDANT 255
            SS    I  S   +T   S  R      A L + + M+S   PS S   P   ++ +A+T
Sbjct: 3769 SSSLGKIGSSSISLTLSSSSIRD-----AELPTPSRMTS---PSLSETIPQSSSISEAST 3820

Query: 254  RN 249
             N
Sbjct: 3821 SN 3822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,820
Number of Sequences: 5004
Number of extensions: 64481
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)