Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20183
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0147 - 15099406-15099446,15100171-15100341,15101032-151011...    47   2e-05
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782...    36   0.028
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595...    28   7.5  

>09_04_0147 -
           15099406-15099446,15100171-15100341,15101032-15101139,
           15101974-15102034,15102126-15102266
          Length = 173

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 21/47 (44%), Positives = 29/47 (61%)
 Frame = +1

Query: 277 GLKGSLVDELGYPRDDIDVYEVRHARHKIICLQNDHKKVMQLIERGI 417
           G+ G LVD  G+PR DID+  V   R K+  L+NDHK +   IE+ +
Sbjct: 38  GITGGLVDAEGFPRSDIDIPAVLAQRRKLAELRNDHKDITNKIEKNL 84



 Score = 32.7 bits (71), Expect = 0.35
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 504 EGETVNDPTFATISFVDKGSPAEEAGLRAHDELVQFGSV 620
           E + V    FA I  +  GSPA   GL+  DE+V+FG+V
Sbjct: 120 EEDAVTRLPFAIIDELTDGSPAAVDGLQLWDEIVKFGNV 158


>11_02_0056 +
           7828453-7828717,7829425-7829427,7829658-7829912,
           7829997-7830124,7831063-7831207,7832178-7832275,
           7833253-7833395,7835119-7835239,7835492-7835584,
           7835712-7835828
          Length = 455

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 540 ISFVDKGSPAEEAGLRAHDELVQFGSVNYKNFKDVSQIMRIVSHSINYGITVIVRR-ENA 716
           +  V  GSPAE AG R  D +V+F     K  + + +I+ I+   +     V+V+R  N 
Sbjct: 384 VPMVTPGSPAEHAGFRPGDVVVEFDG---KLVESIKEIIDIMGDKVGVPFKVLVKRANNV 440

Query: 717 DLTFELVPK 743
            ++  ++P+
Sbjct: 441 TVSLTVIPE 449


>02_05_0788 +
           31758119-31758384,31758482-31758634,31759385-31759509,
           31759650-31759678,31760943-31761008,31761059-31761125,
           31761226-31761370,31761404-31761451,31762014-31762182,
           31762645-31762779,31762858-31763064,31763608-31763735,
           31763815-31763866,31764046-31764060,31764502-31764609
          Length = 570

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 758 RLSPGFWHKLEG*VSIFPPNNNCDAIIDRV*HNSH 654
           RLSPGF  ++   V I   +  C A+I    HN H
Sbjct: 378 RLSPGFEDRMSAFVGIATLSGCCQAVIPLGSHNDH 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,334,670
Number of Sequences: 37544
Number of extensions: 370126
Number of successful extensions: 847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)