Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20183
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-14|AAL16319.1|  197|Caenorhabditis elegans Hypothetical p...    64   1e-10
Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical pr...    33   0.18 
U21323-5|AAA62550.1|  124|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z78198-2|CAB01567.1|  296|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AL132876-1|CAB60842.2|  132|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U28928-14|AAL16319.1|  197|Caenorhabditis elegans Hypothetical
           protein C44B7.1 protein.
          Length = 197

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 32/83 (38%), Positives = 50/83 (60%)
 Frame = +3

Query: 513 TVNDPTFATISFVDKGSPAEEAGLRAHDELVQFGSVNYKNFKDVSQIMRIVSHSINYGIT 692
           T N+P F  IS V + SPA+  G R  D ++Q+G++++ NF D+ ++ +I   S +  I 
Sbjct: 102 TSNEP-FVKISSVVELSPADIGGFRKDDLIIQYGNLHHGNFNDMQEVAQITKQSEDKIIR 160

Query: 693 VIVRRENADLTFELVPKPWAKPG 761
           V V REN  +  E+ PK W+ PG
Sbjct: 161 VTVIRENRPVRLEICPKKWSGPG 183



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 25/50 (50%), Positives = 33/50 (66%)
 Frame = +1

Query: 256 VLASNNVGLKGSLVDELGYPRDDIDVYEVRHARHKIICLQNDHKKVMQLI 405
           VL +NN  +   L+D  GYP + IDVY VRHARH +ICL+ND   + + I
Sbjct: 27  VLETNNSTMDSPLLDAEGYPLNTIDVYAVRHARHDLICLRNDRAALTEKI 76


>Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical
           protein F09E8.6 protein.
          Length = 503

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 415 YLSRSVALLSCDHFVGKLSCDARVSLHKRLCHHEGILAHQL 293
           Y+ R+VA   C  +VG+   +  VSL    C  +GI+AH+L
Sbjct: 173 YVKRNVAF-GCSSYVGRAGGNQTVSLEVDKCFSKGIIAHEL 212


>U21323-5|AAA62550.1|  124|Caenorhabditis elegans Hypothetical
           protein C45G9.7 protein.
          Length = 124

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 540 ISFVDKGSPAEEAGLRAHDELVQFGSVNY 626
           I+ V+ GSPA+ AGLR HD+++Q    ++
Sbjct: 63  ITNVESGSPADVAGLRKHDKILQVNGADF 91


>Z78198-2|CAB01567.1|  296|Caenorhabditis elegans Hypothetical
           protein F55C5.2 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 105 KSIMLDGYNYCNCKFADLIRCIDFCFENALQNL 7
           ++++L+  N  N K   L   IDFC EN L+ L
Sbjct: 101 EAVVLNPVNGVNAKIPRLNEAIDFCVENGLKML 133


>AL132876-1|CAB60842.2|  132|Caenorhabditis elegans Hypothetical
           protein Y105E8A.1 protein.
          Length = 132

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 292 LVDELGYPRDDIDVYEVRHARHKIICLQNDHKK 390
           ++D LG P D ID+ +  HA  +    +N  KK
Sbjct: 27  ILDGLGIPFDSIDITKPEHAEQRRFMRENASKK 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,503,152
Number of Sequences: 27780
Number of extensions: 360087
Number of successful extensions: 921
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)