Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20182
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    78   2e-15
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    54   2e-08
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    27   2.2  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    27   2.9  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.8  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   6.8  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   9.0  

>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
 Frame = +1

Query: 328 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVK--MISAEAPVLFAKAAEIF 501
           L ++W K ++ ++  + +  KT  LPLARIKK+MK D++VK  MISAEAP LFAK +EIF
Sbjct: 86  LAEYWQKTIDTLEH-DDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIF 144

Query: 502 IHG*RCEPGRIRRKIKGGLCSATT*RQAILKSDQFDFLIDIVPR----HEVKPTKPRYDA 669
           I           +K +      +    A+ KS+ +DFLIDI+ +         ++    A
Sbjct: 145 IAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYDFLIDIISKDNNNSRASSSQAHMSA 204

Query: 670 ARKAPSTDQYYLQLAPASGGLQN 738
            + A       LQ  P   GL N
Sbjct: 205 TQVAAMGGMNGLQPFPTQAGLPN 227



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +3

Query: 474 LIREGC*DFYTRLTLRAWSHTEENKRRTLQRNDIA 578
           L  +G   F   LT+RAW H ++N+RRTLQR+DIA
Sbjct: 136 LFAKGSEIFIAELTMRAWLHAKKNQRRTLQRSDIA 170


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 35/104 (33%), Positives = 53/104 (50%)
 Frame = +1

Query: 367 KVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHG*RCEPGRIRRKI 546
           K N   +     P+ARIKKIM+ D++V  ++   PV+ +KA E+F+     E  +  R  
Sbjct: 13  KPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLH 72

Query: 547 KGGLCSATT*RQAILKSDQFDFLIDIVPRHEVKPTKPRYDAARK 678
           +    + +  + A+   +QFDFL DIV   E  P  P   A RK
Sbjct: 73  QAKRVTVSHLKHAVQSVEQFDFLQDIV---EKVPDAPPIKAERK 113


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 660 LRRRQKSPKHGSVLPPV 710
           LR R +SPKH S +PP+
Sbjct: 59  LRMRMQSPKHASYIPPL 75


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 221  WTFCSFFNQLHETNAPMFLFNYHSKLILKLCFGKL 117
            WTF  F+ Q++      +LF+Y   ++  L F  L
Sbjct: 1080 WTFTLFWYQIYNNFDANYLFDYTYVMLFNLIFSSL 1114


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 678 FSGGVVTRFRRLDFMPRHYVDQEIELIRFQ 589
           FS G + +FRR  ++ +  V+Q +E I+F+
Sbjct: 126 FSNGWLDKFRRRHYIQQSAVNQALESIKFE 155


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 373 NSEDFKTQALPLARIKKIMKL 435
           N ++ K Q LPL  IKKI K+
Sbjct: 16  NLQEVKPQVLPLEEIKKIYKI 36


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 619 DIVPRHEVKPTKPRYDAARKAPSTDQYYLQLAP 717
           DIV ++++KP  PR+   R   +T +   Q  P
Sbjct: 740 DIVVQYDMKPDSPRFQQLRAQITTPEIEKQSTP 772


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 650 RNRVTTPPEKPQARISTTSS*RQH--QAAYRTVRSS 751
           + R T  P +P+A  STTS  + H   A   T RSS
Sbjct: 148 QTRATRKPAQPKAEKSTTSKSKSHTTTATTHTSRSS 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,378
Number of Sequences: 5004
Number of extensions: 49673
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)