Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20182
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49434| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.6e-08)         38   0.009
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    31   1.0  
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)                        29   5.4  
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)                 29   5.4  
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              28   7.2  
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_49434| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.6e-08)
          Length = 120

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +1

Query: 379 EDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHG*RCEPGRIRRKIKGGL 558
           E  K   LPL++IK I+K   ++  IS E+  L A++ E+F++        ++++     
Sbjct: 9   ESGKLTQLPLSKIKTILKSSPDLANISQESLFLIARSTEVFVN--YLAVAALKKEESKKH 66

Query: 559 CSATT*RQAILKSDQFDFLIDIVP 630
            S     Q +   D   FL DI+P
Sbjct: 67  LSYKALAQLVEDEDALQFLSDIIP 90


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 628 PRHEVKPTKPRYDAARKAPSTDQYYLQLAPASGGLQNSSQ 747
           PR E  P+KPR + A K+P   +Y L    AS  L  S++
Sbjct: 656 PRQEPTPSKPREEKAEKSPG--EYRLSALDASSPLDESAE 693


>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 864

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 205 FSTNFTRQTHRCFYSIITQN*YLNYVLVNYSKFRKQYKHGNQ---*SEYYLEISNRQLLK 35
           FS  + R  HR FYS  T    + YV+ +Y  FR    HG+      E +L    R LL 
Sbjct: 797 FSIEYWRWHHR-FYSGSTATIRIFYVVHHYKPFRVDLPHGHSGYVNLEIFLAKDLRDLLS 855

Query: 34  MRLT 23
            +L+
Sbjct: 856 SKLS 859


>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
          Length = 2084

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 343  DKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEI 498
            D  L DIQ   +E  K ++  L ++KK+ K ++E K +     VL  + A++
Sbjct: 977  DSKLNDIQSKFTETEKEKSQLLDKVKKLEKSEKEFKQLEYNITVLQNQLADM 1028


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 208  LQNVHVLLCAC*ANNEVTTSEEVDADV 288
            L+ VH LL AC A NE+T +E +D  V
Sbjct: 2308 LEQVHALL-ACNAGNELTCTETIDEHV 2333


>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1090

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 586  ILKSDQFDFLIDIVPRHEVKPTKPRYDAARKAPSTDQYYLQLAPASGGL 732
            +L  ++   +ID +P++ +KPT    D+    P       Q +   GGL
Sbjct: 891  VLPKEKTIVIIDSLPQNYIKPTATTQDSMPSTPEDKPARKQTSQGGGGL 939


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,012,673
Number of Sequences: 59808
Number of extensions: 387199
Number of successful extensions: 1006
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)