Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20182
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024493-10|AAK68346.1|  232|Caenorhabditis elegans C. elegans N...    71   9e-13
AL132949-3|CAB61070.1|  179|Caenorhabditis elegans Hypothetical ...    46   2e-05
Z70753-7|CAD82914.1|  305|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z70753-6|CAA94762.1|  331|Caenorhabditis elegans Hypothetical pr...    32   0.39 
AC024808-4|AAK29924.1|  252|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z92796-4|CAB63231.1|  516|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC024776-4|AAK68465.2|  155|Caenorhabditis elegans Hypothetical ...    28   6.3  

>AF024493-10|AAK68346.1|  232|Caenorhabditis elegans C. elegans
           NFYC-1 protein protein.
          Length = 232

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
 Frame = +1

Query: 331 QQFWDKVLEDIQKVNSEDF----KTQALPLARIKKIMKLDEEVK--MISAEAPVLFAKAA 492
           + FW +  + + +++ ED     K  ++P+AR+KKIM++D++V+  MI+++AP+  A+AA
Sbjct: 83  EDFWREKKQKMTEISEEDMLNKSKNMSVPMARVKKIMRIDDDVRNFMIASDAPIFMAQAA 142

Query: 493 EIFIHG*RCEPGRIRRKIKGGLCSATT*RQAILKSDQFDFLIDIVPRHEVKPT 651
           E FI        +   + +  +        A+ KSDQFDFLID +P   V  T
Sbjct: 143 EFFIEEMTAMGWQYVSEARRRILQKADIASAVQKSDQFDFLIDFLPPKTVPTT 195


>AL132949-3|CAB61070.1|  179|Caenorhabditis elegans Hypothetical
           protein Y53F4B.3 protein.
          Length = 179

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/52 (40%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
 Frame = +1

Query: 355 EDIQKVNS--EDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFI 504
           ED++++    E+     LPL R+KK+++++ +V+M++ EA  L AKAAE+FI
Sbjct: 19  EDVREIEEHVEELVRSQLPLGRVKKVVRMNPDVEMLNNEALQLMAKAAELFI 70


>Z70753-7|CAD82914.1|  305|Caenorhabditis elegans Hypothetical
           protein F40F9.7b protein.
          Length = 305

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 20/77 (25%), Positives = 32/77 (41%)
 Frame = +1

Query: 385 FKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHG*RCEPGRIRRKIKGGLCS 564
           F T  +   RIKK+M+ DE++  +    PV   +A E F            +       +
Sbjct: 35  FSTAKIQPTRIKKVMQSDEDIGRMVQSVPVSIGRAMEHFAEKFLQAAAEATQFTSSKTLN 94

Query: 565 ATT*RQAILKSDQFDFL 615
               +QA+L +  F FL
Sbjct: 95  PQHMKQAVLNTPHFSFL 111


>Z70753-6|CAA94762.1|  331|Caenorhabditis elegans Hypothetical
           protein F40F9.7a protein.
          Length = 331

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 20/77 (25%), Positives = 32/77 (41%)
 Frame = +1

Query: 385 FKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHG*RCEPGRIRRKIKGGLCS 564
           F T  +   RIKK+M+ DE++  +    PV   +A E F            +       +
Sbjct: 61  FSTAKIQPTRIKKVMQSDEDIGRMVQSVPVSIGRAMEHFAEKFLQAAAEATQFTSSKTLN 120

Query: 565 ATT*RQAILKSDQFDFL 615
               +QA+L +  F FL
Sbjct: 121 PQHMKQAVLNTPHFSFL 137


>AC024808-4|AAK29924.1|  252|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.7 protein.
          Length = 252

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 176 PMFLFNYHSKLILKLCFGKLL 114
           PM +FN  S L + +CFG LL
Sbjct: 122 PMIIFNTSSALSISICFGNLL 142


>Z92796-4|CAB63231.1|  516|Caenorhabditis elegans Hypothetical
           protein H25K10.5 protein.
          Length = 516

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 592 KSDQFDFLIDIVPRHEVKPTKPRYDAARKAPSTDQYYLQLAPASGGLQNSSQL 750
           K + F F ID+V R  +K    RY+++     T+   L+      G+ NSS L
Sbjct: 182 KPEVFTFFIDLVTRGNLKDCTCRYNSSEPQQPTNCKALKGGLNITGITNSSDL 234


>AC024776-4|AAK68465.2|  155|Caenorhabditis elegans Hypothetical
           protein Y41D4B.15 protein.
          Length = 155

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 195 TSRDKRTDVFIQLSLKINT*TMFW*ITLSSESNINT-VTNNQSIIWRSPIANY 40
           + RD  T VF+   LK+    ++     S  S + T  T++ SI W +P  NY
Sbjct: 42  SDRDDLTLVFLNQDLKMQNSQLYVPEMSSRVSGLETSATSSVSIYWNTPTENY 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,497,706
Number of Sequences: 27780
Number of extensions: 283798
Number of successful extensions: 715
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)