Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20182
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           25   0.77 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.4  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   9.5  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   9.5  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   9.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   9.5  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   9.5  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   9.5  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   9.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.5  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
 Frame = +3

Query: 312 GGAANPPAVLGQSLRGHTES*FRRLQDPSFAVGSHQEDHETRRGGEDDISRGTGLIRE-- 485
           GGA     VLG +++G T+   RRL                RRGG   + R +GLI E  
Sbjct: 14  GGAKRHRKVLGDNIQGITKPAIRRL---------------ARRGG---VKRISGLIYEET 55

Query: 486 -GC*DFYTRLTLR-AWSHTEENKRRTLQRNDI 575
            G    +    +R A ++TE  KR+T+   D+
Sbjct: 56  RGVLKVFLENVIRDAVTYTEHTKRKTVTAMDV 87


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -3

Query: 268 RTW*PRCLLSRHKEAHGHFVVFSTNFTR 185
           R W P    S  KE H H ++    + R
Sbjct: 114 RVWMPDLFFSNEKEGHFHNIIMPNVYIR 141


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -3

Query: 268 RTW*PRCLLSRHKEAHGHFVVFSTNFTR 185
           R W P    S  KE H H ++    + R
Sbjct: 114 RVWMPDLFFSNEKEGHFHNIIMPNVYIR 141


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 411 SQRQSLGLEVFGINFLYVL 355
           S+ + +G EVF +NF+ V+
Sbjct: 203 SEFRRMGREVFAVNFMNVM 221


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -3

Query: 184 QTHRCFYSIITQN*YLNYVLVNYSKFRKQYKHGNQ*SEYYLEISNRQL 41
           +  RC    I  +   NY   NY+ +   Y    +  +YY  I+  Q+
Sbjct: 72  ERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -3

Query: 184 QTHRCFYSIITQN*YLNYVLVNYSKFRKQYKHGNQ*SEYYLEISNRQL 41
           +  RC    I  +   NY   NY+ +   Y    +  +YY  I+  Q+
Sbjct: 72  ERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -3

Query: 184 QTHRCFYSIITQN*YLNYVLVNYSKFRKQYKHGNQ*SEYYLEISNRQL 41
           +  RC    I  +   NY   NY+ +   Y    +  +YY  I+  Q+
Sbjct: 72  ERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -3

Query: 184 QTHRCFYSIITQN*YLNYVLVNYSKFRKQYKHGNQ*SEYYLEISNRQL 41
           +  RC    I  +   NY   NY+ +   Y    +  +YY  I+  Q+
Sbjct: 72  ERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -3

Query: 184 QTHRCFYSIITQN*YLNYVLVNYSKFRKQYKHGNQ*SEYYLEISNRQL 41
           +  RC    I  +   NY   NY+ +   Y    +  +YY  I+  Q+
Sbjct: 72  ERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -3

Query: 184 QTHRCFYSIITQN*YLNYVLVNYSKFRKQYKHGNQ*SEYYLEISNRQL 41
           +  RC    I  +   NY   NY+ +   Y    +  +YY  I+  Q+
Sbjct: 72  ERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -3

Query: 184 QTHRCFYSIITQN*YLNYVLVNYSKFRKQYKHGNQ*SEYYLEISNRQL 41
           +  RC    I  +   NY   NY+ +   Y    +  +YY  I+  Q+
Sbjct: 72  ERERCKEPKIISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQI 119


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 660 LRRRQKSPKHGSVLPP 707
           L  R   P HG++LPP
Sbjct: 353 LAMRLSHPLHGNLLPP 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,666
Number of Sequences: 438
Number of extensions: 3305
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)