Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20180
         (793 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.69 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    25   0.69 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   1.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   1.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.2  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   4.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 575 FICHR*EYKIVKKNMINNFFSFDGHITYLSFRDFS 679
           F C++ +Y  V K+M+N+      ++   S RD S
Sbjct: 259 FQCNKCDYTCVNKSMLNSHMKSHSNVYRYSCRDCS 293


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 575 FICHR*EYKIVKKNMINNFFSFDGHITYLSFRDFS 679
           F C++ +Y  V K+M+N+      ++   S RD S
Sbjct: 17  FQCNKCDYTCVNKSMLNSHMKSHSNVYRYSCRDCS 51


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 182  LVMVLLLSQAKLSWSTMKVALNKTK 256
            L++  +++   +SW T +VA+ KTK
Sbjct: 1046 LILYSIINLNVVSWGTREVAVKKTK 1070


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 182  LVMVLLLSQAKLSWSTMKVALNKTK 256
            L++  +++   +SW T +VA+ KTK
Sbjct: 1046 LILYSIINLNVVSWGTREVAVKKTK 1070


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 182  LVMVLLLSQAKLSWSTMKVALNKTK 256
            L++  +++   +SW T +VA+ KTK
Sbjct: 1046 LILYSIINLNVVSWGTREVAVKKTK 1070


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 182  LVMVLLLSQAKLSWSTMKVALNKTK 256
            L++  +++   +SW T +VA+ KTK
Sbjct: 1046 LILYSIINLNVVSWGTREVAVKKTK 1070


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 294 FRLGAKEVISGWDVGVSGMKVGGKRKII 377
           FR G + V +G +  +S MKV  + K+I
Sbjct: 208 FRAGLERVQNGENQWISVMKVNKQPKVI 235



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 639 LMDILPICHLETSQEDCYNYMI 704
           +   LP+C  +  Q+ C N  I
Sbjct: 24  IFGFLPVCSSQKGQKTCLNLSI 45


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,436
Number of Sequences: 336
Number of extensions: 3695
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)