Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20180
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    83   4e-17
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    81   2e-16
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    69   8e-13
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    28   1.3  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    27   4.1  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   7.1  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 44/72 (61%), Positives = 50/72 (69%)
 Frame = +3

Query: 255 KMFDNCLKGPGFKFRLGAKEVISGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPN 434
           K+FD   KG  F F LG  EVI GWDVGV+GM+ GG+RKI  P  MAYG + S P IP N
Sbjct: 290 KVFDKNTKGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQ-SIPGIPKN 348

Query: 435 STLVFEVELKNV 470
           STLVFEV+L  V
Sbjct: 349 STLVFEVKLVRV 360



 Score = 34.7 bits (76), Expect = 0.015
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 142 KALSGGVQIEDLKLGNGPVAKPGKVVMVYYEGRLKQNK 255
           + L GGV + D+K G+G  A  GK V + Y G+L+  K
Sbjct: 253 RTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGK 290


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 40/72 (55%), Positives = 49/72 (68%)
 Frame = +3

Query: 246 TKQKMFDNCLKGPGFKFRLGAKEVISGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPVI 425
           T  K+FD  + G  F F LG +EVI GWDVG+ GM+VGG+R I  P  MAYG+K  P  I
Sbjct: 288 TNGKVFDKNITGKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-I 346

Query: 426 PPNSTLVFEVEL 461
           P NS LVF+V+L
Sbjct: 347 PANSDLVFDVKL 358



 Score = 34.7 bits (76), Expect = 0.015
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 139 KKALSGGVQIEDLKLGNGPVAKPGKVVMVYYEGRLKQNK 255
           K+ L G V ++D   G+GP AK  K V + Y GRL   K
Sbjct: 253 KQVLEGNVTVQDKVKGDGPAAKRKKRVSMRYIGRLTNGK 291


>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 68.9 bits (161), Expect = 8e-13
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = +3

Query: 246 TKQKMFDNCL-KGPGFKFRLGAKEVISGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPV 422
           T  K FD+ + +G  F   +G  ++I GWD GV  M +G K K+   P   YG +G P +
Sbjct: 32  TNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGL 91

Query: 423 IPPNSTLVFEVEL 461
           IPPNSTL+F+VEL
Sbjct: 92  IPPNSTLLFDVEL 104



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 157 GVQIEDLKLGNGP-VAKPGKVVMVYYEGRLKQNKKCLTTASR 279
           GV+ + +  GNG    KPG  + ++Y G L   KK  ++  R
Sbjct: 2   GVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDR 43


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -3

Query: 383 RADNLPFASDFH-TRNTNIP 327
           R D++PFASDF  +R TN+P
Sbjct: 180 RCDDIPFASDFFCSRETNMP 199


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 604 NFVLLSVTNEIQVAISTSDWQTYMFHSYNGNQ*SNYLLLKTSV 476
           N +    T+++ V    +D  +Y F SY GN   ++L+L  SV
Sbjct: 197 NELTSQTTDQLSVTPKKADNDSYYFESYAGND-IHFLMLNDSV 238


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 244 KQNKKCLTTASRDLDSSSVLAQKRSLAAGMLVFLV*KSEAK 366
           K+  KC T+++ DLDSSS      S+ + +   L+ +   K
Sbjct: 65  KKGSKCSTSSTTDLDSSSASNSSCSIPSSISEKLLPRDNVK 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,202
Number of Sequences: 5004
Number of extensions: 60925
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)